Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3210 ATGGATCCTCTATGTGAGTTTTGTCGGGTGGTGAGAGCTGTGGTTTACTGTAAGTCAGATTCTGCTCGTCTCTGCTTGCATTGCGATGGCTGTGTACACTCTGCAAATTCTTTGTCTCGCAGGCATTCGCGTTCCCTCCTATGCGATAAGTGCAATTCCCAGCCGGCAATGATCCGCTGCATGAATCATAAGTTGTCATTATGTCAAGGTTGTGACTGGAATCCAAATGACTGTTCTGCATTGGGACATAGGCGCCTTGCATTGAATTGCTACACTGGTTGCCCCTCTTTGGCTGAGTTTTCTAGGCTCTGGTCTTTTTTGTTTGATGCTAATTCCTCACTTGGTGGTTGGGAATCGGTTGGTACTTTGCCAAAAAGTGAGAGCTGCACTAGCCAGTGTTTGGAGCAAACTGATCATAATGGTGGTTATTTTGGTTTGGTGAGTGACAAGTTGGATGAAATTGAATCTTGTGTCAGATATCAACCTCGGATGGATCAGTCTCAAATCATTCCATCAAATCCAAATTACACACCGTACTGCAAAGACGAAGCATTTTTCTTTCCTCAAGACTCAAACCAGCCAAAGGAATGTCCTAATCTAGGAATTCATGATGGGAATGAACTTTGTGAAGGTTTCAATGTGGATAACGTTCAATTAAACTTTGAAATTGCTGATGAAATATTTTACTGTTCACAAGTTGCCACAAGATACCACCTTGAAGATGGAGGAATGGACTGTTTATTGATGGATAAAAACATAGCAGTTACAGAATCTAGTTCACTTATTGAGAGTGCCATGGAGGCATCATCATCTATCCAACAAGATTGTGTGGCTTTTCAATCATCGAGGGCTGGTGGGTCAGCTAGTGTGATGCAGGTTATCAACAGCAATACCAATTGTGCACTTATGAATCCTAGCTGCACTAAAAACATCAGTCTGGGATTTCCTCAGGGTCAAGTTCATTCAAACATGCCACTTCAATTTCCCAACATTGTTGGTGAAAATAATTCTACTGAATATCAAGACTGCGGGTTATCGCGAGTGGGTGAATCCCCCTGGGAATCAAATTTGGAGGGTACATGCCCACAAGCAAGGGATAAAGCTAAAATGAGATACAATGAGAAAAAGAAAACTCGAACCTTTGGTAAGCAAATAAGATATGCTTCTCGCAAAGCAAGGGCCGATACAAGAAAACGTGTGAAAGGTAGATTTGTTAAAGCAGGTGAAGCATATGATTATGACCCTCTTGGGACAAGGGACATCTAA 1266 0.421 MDPLCEFCRVVRAVVYCKSDSARLCLHCDGCVHSANSLSRRHSRSLLCDKCNSQPAMIRCMNHKLSLCQGCDWNPNDCSALGHRRLALNCYTGCPSLAEFSRLWSFLFDANSSLGGWESVGTLPKSESCTSQCLEQTDHNGGYFGLVSDKLDEIESCVRYQPRMDQSQIIPSNPNYTPYCKDEAFFFPQDSNQPKECPNLGIHDGNELCEGFNVDNVQLNFEIADEIFYCSQVATRYHLEDGGMDCLLMDKNIAVTESSSLIESAMEASSSIQQDCVAFQSSRAGGSASVMQVINSNTNCALMNPSCTKNISLGFPQGQVHSNMPLQFPNIVGENNSTEYQDCGLSRVGESPWESNLEGTCPQARDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAGEAYDYDPLGTRDI* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3210 421 CDD Bbox1_BBX-like 4 47 - -
Gso11g3210 421 ProSiteProfiles CCT domain profile. 365 407 IPR010402 GO:0005515
Gso11g3210 421 ProSiteProfiles Zinc finger B-box type profile. 43 88 IPR000315 GO:0008270
Gso11g3210 421 SMART bboxneu5 1 47 IPR000315 GO:0008270
Gso11g3210 421 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gso11g3210 421 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 418 - -
Gso11g3210 421 PANTHER CCT MOTIF FAMILY PROTEIN-RELATED 3 418 - -
Gso11g3210 421 Pfam CCT motif 365 407 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3210 Gso-Chr11 47877388 47881409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3210 1 415 C2C2-CO-like Transcription Factor Family AT3G21880 42.488 2.33e-100 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso11g3210 CCT 1.4e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3210 - - gmx:100804738 871.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1655 12 40147409 40151886 Gso11g3210 11 47877388 47881409 GST