Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3197 ATGCAGGTCACGTCCTCACAAAGCCACATGAAAGCCGAGCTAAAGGGCACGACGTCCATTTCCTTTCAAAACCCTAACACCGCTCTCTTCAACACACCCCACAACAACCCTCTCTCGGGAGCACTCAAAGGGTGCCTCGGAAGCCTCGATGGGGCTTGTATTGAGAAGCTATTGCTCCACTGCGCCAGTGCTTTGGAGAGCAACGACATCACCTTGGCTCAACAAGTCATGTGGGTGCTCAACAACGTTGCTTCCCCTGTTGGAGACACTAACCAAAGGCTCACCTCGTGGTTTCTAAGGGCCTTAATCTCTAGGGCTTCAAGAATTTGCCCCACTGCCATGAGTTTCAAAGGAAGCAACACAATCCAAAGGAGGTTGATGAGCGTGACCGAGCTTGCCGGGTATGTGGATCTAATTCCTTGGCATAGGTTTGGGTATTGTGCGTCCAACAATGAAATTTACAAAGCAATAACGGGGTTCCAAAGGGTACATATTGTAGATTTTAGCATAACTCATTGCATGCAATGGCCTACTTTTATAGATGGGTTAGCAAAAAGGCCAGAAGGACCCCCTTCTCTTAGAATCACGGTTCCATCTTGTAGACCACATGTACCCCCCTTGGTCAATATTTCAATACACGAAGTTGGGTTGCGTTTAGGGAATTTTGCTAAGTTCAGAGATGTCCCTTTTGAATTCAATGTTATAGGAAACACAGAAGGACCATTAACACCTGCGGAATTGAGCGATGAATCGACTAGCTTTCACTTTGAAGCAATGTTAAGTCTCTTAAATCCTACCATGCTAAACCTTAGGGAAGATGAAGCTTTGGTCATAAATTGCCAAAACTGGCTACGTTATTTGTCTGATGATAGAAAGGGAATTAGCTGCCAAAGTTTTTCCCTTAGGGATGCTTTTTTGAATCTAATCAAAGGCCTTAACCCCAGGATTGTGCTCTTGGTTGATGAGGATTGTGATCTTAGTGCATCAAGTCTCACATCAAGAATAACCACATGTTTCAACCATCTATGGATACCCTTTGATGCATTGGAGACTTTTTTGCCAAAAGATAGTTGTCAGAGGTCAGAGTTTGAATCCGACATAGGCCAGAAGATTGAGAACATCATAGGCTACGAAGGGCACCAAAGAATTGAGAGGTTGGAATCTGGGGTGCAAATGTCCCAAAGAATGAAAAATGTGGGCTACCTCAGTGTTCCTTTTTGTGATGAAACTGTTAGGGAAGTAAAAGGTTTGCTAGATGAGCATGCTAGTGGGTGGGGGATGAAAAGAGAAGAAGGTATGTTAGTTCTCACGTGGAAAGGAAACAGCTGTGTGTTTGCGACAGCTTGGGTCCCCTGTGAAATATTGAGGGATCATCATATCGGTATGGATGCAAGCCTGTCTTAA 1404 0.4459 MQVTSSQSHMKAELKGTTSISFQNPNTALFNTPHNNPLSGALKGCLGSLDGACIEKLLLHCASALESNDITLAQQVMWVLNNVASPVGDTNQRLTSWFLRALISRASRICPTAMSFKGSNTIQRRLMSVTELAGYVDLIPWHRFGYCASNNEIYKAITGFQRVHIVDFSITHCMQWPTFIDGLAKRPEGPPSLRITVPSCRPHVPPLVNISIHEVGLRLGNFAKFRDVPFEFNVIGNTEGPLTPAELSDESTSFHFEAMLSLLNPTMLNLREDEALVINCQNWLRYLSDDRKGISCQSFSLRDAFLNLIKGLNPRIVLLVDEDCDLSASSLTSRITTCFNHLWIPFDALETFLPKDSCQRSEFESDIGQKIENIIGYEGHQRIERLESGVQMSQRMKNVGYLSVPFCDETVREVKGLLDEHASGWGMKREEGMLVLTWKGNSCVFATAWVPCEILRDHHIGMDASLS* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3197 467 PANTHER OS05G0500600 PROTEIN 11 451 - -
Gso11g3197 467 ProSiteProfiles GRAS family profile. 45 450 IPR005202 -
Gso11g3197 467 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 11 451 IPR005202 -
Gso11g3197 467 Pfam GRAS domain family 55 449 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3197 Gso-Chr11 47782587 47784638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3197 33 452 GRAS Transcription Factor Family AT3G49950 44.988 1.80e-120 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso11g3197 GRAS 2.4e-86 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3197 - - gmx:100802093 956.822
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1664 12 40232320 40234410 Gso11g3197 11 47782587 47784638 GST