Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3194 ATGTTAGCCAAGGCCCATAACAAAGGGGATGGATCTAAGTCCCTGGCTAAGATACTGGCAAAATGGAAAGAATATAATGCCCAGATTGATTCCAGCAGTGATGCAGATAAGCCAATTCGCAAAGTTCCTGCCAAAGGATCGAAGAAGGGGTGCATGAAAGGTAAAGGGGGGCCAGAGAACTCACGGTGTAACTACCGAGGTGTCAGGCAAAGGACTTGGGGAAAGTGGGTTGCTGAAATCCGAGAGCCAAACAGAGGCAATAGGCTTTGGCTAGGTACTTTCCCCACTGCCATTGGAGCTGCCCTTGCATATGATGAAGCGGCCAGGGCAATGTACGGTTCCTGTGCCCGTCTCAACTTTCCCAATGTTTCAGTTTCCAGTTTCTCTGAGGAATCTTCCAAAGATTCTCCGTCTGCGAATCATTGTGGTTCCTCAATGGCAGTGTCTGCAAACGAGTCCATGATTTCACCTAGTAACTCTGGGGTAGATGCAGAAGAGGATGTTGATATGGAGCCCATTTCCTTATCCTTAAGTGTAAAGCATGAGAATGGGGAAGGTGAATCGGGGATAAGTTCATCCCCTCCTTCTTCCTCATGA 597 0.4807 MLAKAHNKGDGSKSLAKILAKWKEYNAQIDSSSDADKPIRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGNRLWLGTFPTAIGAALAYDEAARAMYGSCARLNFPNVSVSSFSEESSKDSPSANHCGSSMAVSANESMISPSNSGVDAEEDVDMEPISLSLSVKHENGEGESGISSSPPSSS* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3194 198 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Gso11g3194 198 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Gso11g3194 198 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Gso11g3194 198 MobiDBLite consensus disorder prediction 127 198 - -
Gso11g3194 198 Gene3D AP2/ERF domain 64 123 IPR036955 GO:0003700|GO:0006355
Gso11g3194 198 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 176 - -
Gso11g3194 198 MobiDBLite consensus disorder prediction 30 59 - -
Gso11g3194 198 MobiDBLite consensus disorder prediction 127 160 - -
Gso11g3194 198 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Gso11g3194 198 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Gso11g3194 198 CDD AP2 63 122 IPR001471 GO:0003700|GO:0006355
Gso11g3194 198 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
Gso11g3194 198 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3194 Gso-Chr11 47744766 47746564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3194 8 132 AP2-EREBP Transcription Factor Family AT2G40340 57.639 3.60e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso11g3194 AP2 3.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3194 - K09286 gmx:100499747 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1668 12 40276622 40278450 Gso11g3194 11 47744766 47746564 GST
Gso11g3194 11 47744766 47746564 Gso12g0844 12 9201590 9203442 PCT
Gso11g3194 11 47744766 47746564 Gso6g2476 6 46482679 46484832 PCT
Gso12g0844 12 9201590 9203442 Gso11g3194 11 47744766 47746564 PCT
Gso6g2476 6 46482679 46484832 Gso11g3194 11 47744766 47746564 PCT