Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3189 ATGAAGAACTGCGAGTTGTGCAAGCTTCCGGCTCGGACTTTCTGCGAGTCGGACCAGGCTAGCTTATGCTGGGACTGCGACGCCAAGGTTCATGGAGCCAACTTCCTCGTGGAAAGACACACGCGCACGCTCCTCTGCCACGCGTGCCAGTCGCCCACGCCGTGGAAGGCCTCCGGCGCCGCCCTCGGAAACACCGTCTCGCTGTGCGAGAGATGCGCCGGCGGAACCACCGAACAAGGTCAAGAGAGCCAAGGAGGCAATGACGACGACATAGACACCGACGATGAGGATGACTACGATGAGAGCGAGGACGAGGTTGCCGCCGACGAGGAGGACGGAGACAACCAGGTTGTCCCTTGGTCCTCCGAGCCGCCGCCACCAGCCCCGAGCTCTTCCAGCAGCGAAGAGTCGGTTAGCCGGTGCAACAACGTGGACGAGGTTTCGACCACATTGAAACGCCGTCGCCAGGAGGACAATGATTTTCAGGGTTGGAATTCGAATAATTGGGGATGTGAACGGAGCGAAGTGGAGAGAGGAGGTTGGTTGGTTCGGTTGCGGCGGAGAACCGCCGATGATGTGGCGGTTGAGCAACGGAGTGCTAGAGCGGCGTCTCCAGACGGTTGCTGTGGTGATAGAGCATCTGAAGACGTTTGA 654 0.5979 MKNCELCKLPARTFCESDQASLCWDCDAKVHGANFLVERHTRTLLCHACQSPTPWKASGAALGNTVSLCERCAGGTTEQGQESQGGNDDDIDTDDEDDYDESEDEVAADEEDGDNQVVPWSSEPPPPAPSSSSSEESVSRCNNVDEVSTTLKRRRQEDNDFQGWNSNNWGCERSEVERGGWLVRLRRRTADDVAVEQRSARAASPDGCCGDRASEDV* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3189 217 Pfam B-box zinc finger 2 43 IPR000315 GO:0008270
Gso11g3189 217 MobiDBLite consensus disorder prediction 198 217 - -
Gso11g3189 217 CDD Bbox1_BBX-like 4 45 - -
Gso11g3189 217 MobiDBLite consensus disorder prediction 132 146 - -
Gso11g3189 217 MobiDBLite consensus disorder prediction 76 169 - -
Gso11g3189 217 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Gso11g3189 217 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 217 - -
Gso11g3189 217 SMART bboxneu5 1 45 IPR000315 GO:0008270
Gso11g3189 217 PANTHER - 1 217 - -
Gso11g3189 217 MobiDBLite consensus disorder prediction 85 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3189 Gso-Chr11 47695274 47696792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3189 2 113 C2C2-CO-like Transcription Factor Family AT4G27310 50.893 5.45e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso11g3189 zf-B_box 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3189 - - gmx:100801024 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1677 12 40402357 40403801 Gso11g3189 11 47695274 47696792 GST
Gso11g3189 11 47695274 47696792 Gso12g0851 12 9319001 9320164 PCT
Gso11g3189 11 47695274 47696792 Gso6g2473 6 46427418 46428491 PCT
Gso12g0851 12 9319001 9320164 Gso11g3189 11 47695274 47696792 PCT
Gso6g2473 6 46427418 46428491 Gso11g3189 11 47695274 47696792 PCT