Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3176 ATGGGAAGAGCACCTTGTTGTGACAAGAATGGCCTCAAAAAAGGTCCATGGACTTCCGAGGAGGATCTCTTGCTCACCAACTACATTCAAACTCATGGACCTGGAAATTGGAGAACCATCCCCAAGAATGCCGGTCTACAAAGATGTGGCAAGAGTTGTCGCCTTAGATGGACTAATTACCTTAGACCCGATATCAAGAGAGGAAGGTTCTCATTTGAAGAAGAGGAGGCCATCATTCAGCTTCACAGTGTCTTGGGAAACAAGTGGTCGGCTATAGCAGCTAGGTTGCCGGGGAGAACCGACAACGAAATAAAGAACTATTGGAACACGCACGTTAGGAAGAGGTTGCTTCGAACGGGAATAGACCCAGTTACACACGCTCCACGCCTCGATCTTCTTGACATCTCCTCGATTCTAAGGTCAGCAATAGGCAACGTTAATCCATCGATTCTGAATCTGCAAGGCCTATTGGGTGCCCAAGCGTTGATGAACCCAGAGTTTTTGAAGCTCGCTGCCACTGCCACACTTTTATCTCTAAAGAATAATGAGAACCCATCAAACTTAGTTTCACAAGTACAACAACAATTCAATAGTGCTGGGAATTGTCTAGTACAAAACCAAGTTGCTGCTCCAAATGATCCGTTTCAGACACCAACTCACGTGAACAATGGCTTATCATCAAGTTCCCCCGAGAATTCAATTCTTTCCCATCTTGGGGAGAATAATAATTACCAGCTGAATGCTCAACAAATTAACCAAGTTGATTTGCTTCTGGACCATGAATTGGAACATTACTTAAACTGTGTAAACCAAAACATTGGCTATGAATCAGTTACACCTTTGTCGACCCCAACCCCATTGAATTCATCATCCACGTATGTGAATAGCAGCACGGAGGAAGAGAGGGACACCTATTGCAGCGATATATTCAAGTTAGAAATTCCAGAGAGTCTTGACATTAGTGATTTCTTGTAA 975 0.4379 MGRAPCCDKNGLKKGPWTSEEDLLLTNYIQTHGPGNWRTIPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEEAIIQLHSVLGNKWSAIAARLPGRTDNEIKNYWNTHVRKRLLRTGIDPVTHAPRLDLLDISSILRSAIGNVNPSILNLQGLLGAQALMNPEFLKLAATATLLSLKNNENPSNLVSQVQQQFNSAGNCLVQNQVAAPNDPFQTPTHVNNGLSSSSPENSILSHLGENNNYQLNAQQINQVDLLLDHELEHYLNCVNQNIGYESVTPLSTPTPLNSSSTYVNSSTEEERDTYCSDIFKLEIPESLDISDFL* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3176 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso11g3176 324 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso11g3176 324 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gso11g3176 324 Gene3D - 69 116 - -
Gso11g3176 324 CDD SANT 69 112 IPR001005 -
Gso11g3176 324 CDD SANT 16 61 IPR001005 -
Gso11g3176 324 Gene3D - 13 66 - -
Gso11g3176 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso11g3176 324 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso11g3176 324 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 319 - -
Gso11g3176 324 PANTHER TRANSCRIPTION FACTOR MYB41 1 319 - -
Gso11g3176 324 SMART sant 66 114 IPR001005 -
Gso11g3176 324 SMART sant 13 63 IPR001005 -
Gso11g3176 324 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso11g3176 324 MobiDBLite consensus disorder prediction 217 236 - -
Gso11g3176 324 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3176 Gso-Chr11 47549810 47551465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3176 1 324 MYB Transcription Factor Family AT4G21440 47.554 1.19e-101 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso11g3176 Myb_DNA-binding 5.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3176 K09422 - gmx:102668351 614.379