Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3143 ATGGCTGCAGCGAACAGTGGCAAATTCGACGTGGGAGATGAAACTCACAAGAATTCACGAAAGGGTAGTGAAAGCCAAGATTGGGAGATTGAGAAGGGAAAGGGCGTGGATTGTTCAAGCTCACAGAGGCGTCAATGGAAGCCAGTTTTTGATGACGCTTCCATCTCATACAATAGACCTCTCAAGAAAATCCGCAGCCCCGATCGCCAAGAAACAAACCAATCTTCTTCTTCTTCTTCTTCTACTACTCCTTTTGAACCTTCTCCACTCTCTAATCCTCCTCCTTCCTCTTCAAGAATAGTGTTTCCTTTTGCTTTTGATGGTTCCCAACACCCCATGCAATTCCCTCACCAATTTGGAACCACAACAAACTCACCTTTCCCTCACCCATCTTTCCAAAACCAGCAACACCAGATGATATCATTTGGGTCTTCCCAACAACATAACAATCTCGCATATCCACCAATCATAGCCCGAGATTCTTCTTCACTTGTACATCATCATCATCAACAACAACAACAACAGCATCAGCAGCAACTTCTTCAGTATTGGAGTGGCGCGTTGAATCTAAGTCCAAGAGGAATGTTAACAAGGTTGGGGCCAGATGGAAGGCCATTGTTTAGTCCTCCAACACAGCGCATAAACACAACAAAACTCTATAGGGGAGTGAGGCAACGCCATTGGGGCAAATGGGTCGCTGAAATCCGTCTTCCACGAAACAGAACGCGTCTCTGGCTAGGCACATTTGACACGGCCGAAGACGCCGCCATGGCCTACGACCGCGAAGCCTTCAAGCAACGAGGAGAGAATGCAAGGCTCAATTTCCCCGAATTGTTCTTCAACAAGGACAAAAAAGAACAAGGAGAAGAAGAAGCTTCTTCGCCGGTTCTTTCGGCTATTGCAAAGCAGAATGAACCTCCTCCTGCCCACCACCGTGACGTCACGATAGAAGAGTCTAACGAAAATGACTCAGGTGACGCCACCGTGAGCGACGAGGTTCATGCTCCTGCTGCTACAGCGAGTTCCGAAGGGGTTTCTCAGGAACTGGTTTGGGGAGAAATGTCTGCATGGTTCAATGCTATTCCTGCTGCTTGGGGTCCTGGTAGTCCCATGTGGGATGATTTGGATGCCACCAATAATCTTCTTTGCCAATCACACATTCCTTTTTCCAATCCCAATCAACAACAGTTCAATGATGCTGATGATGCTCAGAGACAGGAACAAAACACAGGACCAGGTTACCTATGGAAGGATCAGGATTGA 1263 0.4735 MAAANSGKFDVGDETHKNSRKGSESQDWEIEKGKGVDCSSSQRRQWKPVFDDASISYNRPLKKIRSPDRQETNQSSSSSSSTTPFEPSPLSNPPPSSSRIVFPFAFDGSQHPMQFPHQFGTTTNSPFPHPSFQNQQHQMISFGSSQQHNNLAYPPIIARDSSSLVHHHHQQQQQQHQQQLLQYWSGALNLSPRGMLTRLGPDGRPLFSPPTQRINTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKQRGENARLNFPELFFNKDKKEQGEEEASSPVLSAIAKQNEPPPAHHRDVTIEESNENDSGDATVSDEVHAPAATASSEGVSQELVWGEMSAWFNAIPAAWGPGSPMWDDLDATNNLLCQSHIPFSNPNQQQFNDADDAQRQEQNTGPGYLWKDQD* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3143 420 SUPERFAMILY DNA-binding domain 219 277 IPR016177 GO:0003677
Gso11g3143 420 CDD AP2 218 278 IPR001471 GO:0003700|GO:0006355
Gso11g3143 420 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 1 400 - -
Gso11g3143 420 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 400 - -
Gso11g3143 420 MobiDBLite consensus disorder prediction 386 420 - -
Gso11g3143 420 MobiDBLite consensus disorder prediction 1 102 - -
Gso11g3143 420 Gene3D AP2/ERF domain 219 277 IPR036955 GO:0003700|GO:0006355
Gso11g3143 420 SMART rav1_2 219 282 IPR001471 GO:0003700|GO:0006355
Gso11g3143 420 MobiDBLite consensus disorder prediction 70 86 - -
Gso11g3143 420 ProSiteProfiles AP2/ERF domain profile. 219 276 IPR001471 GO:0003700|GO:0006355
Gso11g3143 420 MobiDBLite consensus disorder prediction 285 329 - -
Gso11g3143 420 PRINTS Ethylene responsive element binding protein signature 220 231 IPR001471 GO:0003700|GO:0006355
Gso11g3143 420 PRINTS Ethylene responsive element binding protein signature 242 258 IPR001471 GO:0003700|GO:0006355
Gso11g3143 420 MobiDBLite consensus disorder prediction 10 38 - -
Gso11g3143 420 Pfam AP2 domain 220 268 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3143 Gso-Chr11 47308572 47310812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3143 184 391 AP2-EREBP Transcription Factor Family AT2G20880 50.472 1.14e-56 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso11g3143 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3143 - - gmx:100809887 808.135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1721 12 40809729 40812091 Gso11g3143 11 47308572 47310812 GST