Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3138 ATGCAGTGCCAGCGCTTCTCCGCCGTGCTTTTTCTAAGCTTATGCTTTAGAATTGCGCAAGTATACGCGCACGGGGATTCTGATCTGGACGAACATTGGTACACCGGAACCGCCACGTGGTACGGCGACCCCGAAGGCAACGGTAGCAACGGAGGGGCATGTGGGTATGGTACGTTGGTGGACGTGAAGCCTTTGAAGGGAAGGGTGGCAGCAGTGGGGCCAGTGCTGTTTAAGAAGGGTGAAGGGTGTGGTGCTTGCTATAAGGTCAAGTGTTTGGACCGTAGCATTTGTTCCAAACGGGCAGTGACGGTTATAATAACCGATGAGTGCCCGGGCTGTCGGACTGACCGAACGCACTTCGACCTCAGTGGCTCTGCCTTTGGCCGCATGGCGCTTTCGGGTGAAAACGTTAAGCTCAGAAACCGAGGTGAAATCCCAATCCTTTATCGAAGAGCATCATGCAAGTATGGTGGCAAAAACATTGTCTTCCATGTCAATGAAGGTTCCACACCTTTTTGGCTATCTCTTCAGGTGGAGTTTCAAAATGGAGATGGGGTGATTGGCTCCATGCATATACAACAGGCAGGGTCGAGTGAGTGGCTGCAGATGAAGCGTGAATGGGGTGCAAATTGGTGCATCATTAAGGGGCCATTAAAAGGACCTTTCTCTGTTAAGCTAAGCACATCCACAGGGAAAAGCCTCATTGCCAAAGATGTTATTCCAAGCAATTGGGCTCCAAAAGCCAGTTATACTTCTCGCTTAAATTTCCTGTCTTAA 777 0.5019 MQCQRFSAVLFLSLCFRIAQVYAHGDSDLDEHWYTGTATWYGDPEGNGSNGGACGYGTLVDVKPLKGRVAAVGPVLFKKGEGCGACYKVKCLDRSICSKRAVTVIITDECPGCRTDRTHFDLSGSAFGRMALSGENVKLRNRGEIPILYRRASCKYGGKNIVFHVNEGSTPFWLSLQVEFQNGDGVIGSMHIQQAGSSEWLQMKREWGANWCIIKGPLKGPFSVKLSTSTGKSLIAKDVIPSNWAPKASYTSRLNFLS* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3138 258 Pfam Lytic transglycolase 71 149 IPR009009 -
Gso11g3138 258 SUPERFAMILY PHL pollen allergen 159 252 IPR036749 -
Gso11g3138 258 PANTHER EXPANSIN-LIKE PROTEIN B1 17 257 - -
Gso11g3138 258 PANTHER EXPANSIN-B3 17 257 - -
Gso11g3138 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 159 IPR007112 -
Gso11g3138 258 SUPERFAMILY Barwin-like endoglucanases 31 158 IPR036908 -
Gso11g3138 258 SMART dpbb_1 69 149 IPR007112 -
Gso11g3138 258 Pfam Expansin C-terminal domain 161 241 IPR007117 -
Gso11g3138 258 PRINTS Major pollen allergen Lol pI signature 71 82 IPR005795 GO:0005576|GO:0019953
Gso11g3138 258 PRINTS Major pollen allergen Lol pI signature 109 124 IPR005795 GO:0005576|GO:0019953
Gso11g3138 258 PRINTS Major pollen allergen Lol pI signature 131 146 IPR005795 GO:0005576|GO:0019953
Gso11g3138 258 PRINTS Major pollen allergen Lol pI signature 163 178 IPR005795 GO:0005576|GO:0019953
Gso11g3138 258 PRINTS Major pollen allergen Lol pI signature 179 194 IPR005795 GO:0005576|GO:0019953
Gso11g3138 258 PRINTS Major pollen allergen Lol pI signature 228 245 IPR005795 GO:0005576|GO:0019953
Gso11g3138 258 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Gso11g3138 258 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Gso11g3138 258 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Gso11g3138 258 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Gso11g3138 258 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Gso11g3138 258 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Gso11g3138 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 252 IPR007117 -
Gso11g3138 258 Gene3D - 19 155 IPR036908 -
Gso11g3138 258 Gene3D - 156 257 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3138 Gso-Chr11 47277034 47280049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3138 30 194 Expansin Gene Family AT4G28250 70.909 5.29e-86 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3138 K20628 - gmx:100808279 532.332