Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3136 ATGGCCTTAGACCAGTATTTTGATGAGGCGGTGCCCCAGTTGGATTCCTTGGAAGATAAATCGTCTCTCGAAACATGGAAATGTGGCAGTGACGATATTGCAGATTCTGATAGAAATGCCTCTGGTGGCTTTGATTGCAACATCTGCCTGGAGTGTGTGCAAGATCCAGTGGTCACTCTTTGTGGCCATCTCTACTGCTGGCCCTGTATTTACAAATGGCTTAATTTACAAACTGCCTCTTCTGAAAATGAAGAAGAGAAGCAACAATGTCCAGTCTGCAAATCAGAAATCTCACAGTCGTCCCTTGTTCCACTATACGGCCGCGGCCAAACCGTGTTACCTTCTAAAGGCAAAGACCACCAAGTAGGGGTTGTCATACCAAGAAGACCCCTTGGTCCTACACTTGATTCCGCAACTGTTTCCCCACCTATTTCTCACGTTTATCATCGCCATTATCCGAATCATCCTCAACAATTCAACTCAATTCCTGGCAGTTACACTTCAATGTTCAACACAGGTGGTTCACTAGCAAATGCTTTTGATACAACATATGGAGTCTTCGGTGAGATGATATATGCAAGGGTCTTTGGGAACCAGATGACTAACACATATACATACCCGAATTCTTATGATCTTTCAAGGAACAGTAATCCGAGGATCAGAAGGCATTTAATGCAAGTTGATAGGTCACTCAATAGAATCACTTTTTTCCTTCTTTGTTGCATTGTTTTGTGCCTTCTCTTATTCTGA 750 0.4307 MALDQYFDEAVPQLDSLEDKSSLETWKCGSDDIADSDRNASGGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNLQTASSENEEEKQQCPVCKSEISQSSLVPLYGRGQTVLPSKGKDHQVGVVIPRRPLGPTLDSATVSPPISHVYHRHYPNHPQQFNSIPGSYTSMFNTGGSLANAFDTTYGVFGEMIYARVFGNQMTNTYTYPNSYDLSRNSNPRIRRHLMQVDRSLNRITFFLLCCIVLCLLLF* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3136 249 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 249 - -
Gso11g3136 249 Pfam RING-type zinc-finger 46 91 IPR027370 -
Gso11g3136 249 ProSiteProfiles Zinc finger RING-type profile. 46 94 IPR001841 -
Gso11g3136 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 107 IPR013083 -
Gso11g3136 249 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Gso11g3136 249 SMART ring_2 46 93 IPR001841 -
Gso11g3136 249 CDD RING-HC_AtRMA_like 44 95 - -
Gso11g3136 249 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 249 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gso11g3136 249 SUPERFAMILY RING/U-box 43 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3136 Gso-Chr11 47250522 47252680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3136 39 249 C3H Transcription Factor Family AT4G28270 38.249 3.85e-45 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3136 K10666 - gmx:100785491 495.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1728 12 40878606 40881273 Gso11g3136 11 47250522 47252680 GST