Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3127 ATGGGGTGCATAGCTTCCAAGAGTGCAGCTGTTGAAGACAGCAGGGAAGGTGTGGCAAGGGAATTCACTTCATCCAGCAAAAGGGCGGCCTCGAAGATGAAGGCTTCCGTATTGAATTCGGAGAAAAGGATCGATGGGGTTTGGGGGAAAGATAAGATTTTGGATGGTGCTGATATGAAAGTTTCATTGATTGACAAGGGATCCAGTGGTTCGATGCGGTCGAGTAATAATAAGAACGGGAAGAAGAAAAAGGAGAAACCTGAATTGGCTGTTCTTGATCATCCTGGTCTTGGAAGGGTTCCAAAGGGTTTAGAAGGAGAGCAAGTTGCAGCAGGGTGGCCAACTTGGTTTTCTTCTGTTGCTGGTGAAGCTGTCCAAGGGTGGATACCGCGGAAGGCGGATACTTTTGAGAGGTTTCATAAAATTGGCCAAGGAACCTACAGTACTGTGTATAAGGCTCGTGATTTGACTGACCAAAAGATCGTTGCGTTGAAGAGGGTACGCTTTGATAATTGTGATGCTGAGAGTGTCAAGTTTATGGCAAGGGAAATCCTTGTTCTGCGTAGGCTTGACCATCCAAATGTAATAAAGTTGGAAGGCTTGATAACATCGAAGACCTCTCGCAGCTTGTACCTTGTTTTTGAATACATGGAACATGATCTTACAGGACTTGCATCAAGTCCTAGCATTAAGTTTTCTGAACCACAGGTTAAATGCTACATGCAACAGCTTCTTAGTGGATTGGATCATTGTCATAGTCGTGGTGTCCTCCACCGCGACATAAAGGGCTCAAATCTTCTCATTGACAATAATGGCATCTTAAAGATTGCAGATTTTGGTCTGGCAAATTTTATTGACCCCCATCACAAGGTTCCATTGACCAGCCGTGTAGTAACTCTGTGGTATAGACCACCAGAACTCTTACTTGGAGCATCTAATTACGGAGTTGCTGTGGATTTGTGGAGCACTGGTTGCATACTGGGGGAACTGTATCGTAGCAGACCTATATTACCTGGAAAAACAGAGGTTGAACAATTGCATAGGATTTTTAAACTTTGTGGCTCACCATCTGAGGACTATTGGTGCAAGCTGCGGACGCCACATTCAACAGTATTCAGGCCTCCTCACCATTATAGGCGTTGTGTTGCTGAAACATTTAAAGAATATCCATCTGCTGCCACAAGGCTTATCGAAACCCTACTTTCTTTAGATCCCACACTTCGAGGAACAGCAGCTGCAGCCCTTAAGAGTGAGTTCTTTTCATCGGAACCCCTTCCTTGTGATCCATCAAGCTTACCAAAATATCCTCCCAGCAAAGAGATTGACACTAAATTGTGGGAAGAAGCAACAAGGCATGGAGCTGATAGGGAAAAGGAGCAAAAATTTAGACCAGGAGGTCGACAAGAGAAAGAACCTCAGACATTTATATTATCCAAAGACAGTGCCGACTCCTGCATATCAATGCAGCAAGGGCAACGCCTTCCAAACTCAAGGAGCCGGAATGAGTTCTTCAATCCTCACAGAGAACCTGTGTCTGGACATTTGGTTTTTCCACAAAAACAGTCAGAAGATCATAAAGAAACGCTAAATTATTTCTCCGGCCCTCTTTATCAGAGGCCTTTGCATTCAGGTCCATTGGTTCCAGGTTATGGCTGTGAAATGGTTGGAAGGGAAGCCGGTGAACGGCGGCCTCATGTTTCAAACAAAGTCAACCTACCAAAACTATCTGGGTTAGTGGCATCTAGGACTTCTTCATTGTCTGGAGATCAAAAAGAAAATCCAGTTCCTTCGAGGCCCCGGGAAACAATTGAAGTACAAATATCTTTGGAGTCAACTAATGGATCAGAGTCAAGAAGAAGGCATGATACCAAACACCATTCTCAGAGAATTGATCCCAGGAAAATTGAAAATGGAAAAGTTTCAACTGAAACCTTAATTCAGGATGGGCATGGATCCATGGGAAACAATATCTACCACCTCTCTGGTCCGTTACTGGTTTCTTCAAACAACATAGATCAGATGCTCAAAGAGCGTGATCGAAAGATCCAAGAATATTCAAGACGAGCAAGAATGTACAAGTCTGGTGAGATAGCTCATGCAAAGCAAAATTAG 2112 0.4394 MGCIASKSAAVEDSREGVAREFTSSSKRAASKMKASVLNSEKRIDGVWGKDKILDGADMKVSLIDKGSSGSMRSSNNKNGKKKKEKPELAVLDHPGLGRVPKGLEGEQVAAGWPTWFSSVAGEAVQGWIPRKADTFERFHKIGQGTYSTVYKARDLTDQKIVALKRVRFDNCDAESVKFMAREILVLRRLDHPNVIKLEGLITSKTSRSLYLVFEYMEHDLTGLASSPSIKFSEPQVKCYMQQLLSGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLANFIDPHHKVPLTSRVVTLWYRPPELLLGASNYGVAVDLWSTGCILGELYRSRPILPGKTEVEQLHRIFKLCGSPSEDYWCKLRTPHSTVFRPPHHYRRCVAETFKEYPSAATRLIETLLSLDPTLRGTAAAALKSEFFSSEPLPCDPSSLPKYPPSKEIDTKLWEEATRHGADREKEQKFRPGGRQEKEPQTFILSKDSADSCISMQQGQRLPNSRSRNEFFNPHREPVSGHLVFPQKQSEDHKETLNYFSGPLYQRPLHSGPLVPGYGCEMVGREAGERRPHVSNKVNLPKLSGLVASRTSSLSGDQKENPVPSRPRETIEVQISLESTNGSESRRRHDTKHHSQRIDPRKIENGKVSTETLIQDGHGSMGNNIYHLSGPLLVSSNNIDQMLKERDRKIQEYSRRARMYKSGEIAHAKQN* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3127 703 ProSiteProfiles Protein kinase domain profile. 136 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3127 703 CDD STKc_CDK9_like 136 420 - -
Gso11g3127 703 Pfam Protein kinase domain 136 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3127 703 PANTHER CYCLIN-DEPENDENT KINASE 1 692 - -
Gso11g3127 703 Gene3D Phosphorylase Kinase; domain 1 123 218 - -
Gso11g3127 703 PANTHER CELL DIVISION PROTEIN KINASE 1 692 - -
Gso11g3127 703 ProSitePatterns Protein kinases ATP-binding region signature. 142 165 IPR017441 GO:0005524
Gso11g3127 703 MobiDBLite consensus disorder prediction 577 592 - -
Gso11g3127 703 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Gso11g3127 703 SUPERFAMILY Protein kinase-like (PK-like) 130 428 IPR011009 -
Gso11g3127 703 MobiDBLite consensus disorder prediction 573 629 - -
Gso11g3127 703 MobiDBLite consensus disorder prediction 1 33 - -
Gso11g3127 703 MobiDBLite consensus disorder prediction 64 87 - -
Gso11g3127 703 Gene3D Transferase(Phosphotransferase) domain 1 219 459 - -
Gso11g3127 703 SMART serkin_6 136 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3127 703 MobiDBLite consensus disorder prediction 451 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3127 Gso-Chr11 47155471 47160986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3127 128 463 Core Cell Cycle Gene Families AT5G10270 49.432 8.16e-112 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gso11g3127 Pkinase 3.1e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3127 - K08819 gmx:100781209 1385.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1736 12 40980120 40985696 Gso11g3127 11 47155471 47160986 GST
Gso11g3127 11 47155471 47160986 Gso12g0941 12 11197302 11204111 PCT
Gso11g3127 11 47155471 47160986 Gso6g2398 6 45592135 45599006 PCT
Gso12g0941 12 11197302 11204111 Gso11g3127 11 47155471 47160986 PCT
Gso6g2398 6 45592135 45599006 Gso11g3127 11 47155471 47160986 PCT