Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3125 ATGTCTCCTCGTACTTTGTTTTTCCTTCTTTCAACTCTTCAATTTCTGAGTTTTGTGTCAACAACTGAATTTGTCTACAACAGAAACTTCAACTCCACCAACGTAAAACTCTATGGGAATGCCACCATAGAAAACTCGGTTCTCAAACTCACAAACCAAACTTTCTTCTCCATAGGGCGTGCCTTTTACCCTCACAAAATACCCATGAAGCCACCAAACTCTTCTTCTTCAACCCTTCTTCCCTTTGCAACCTCTTTCATCTTCTCCGTTGCTCCTTGTGAAAACTTCCCTGTGGCTCATGGTTTCGCGTTTGTTGTCACGCCCGTGATGTCCGCAAATGGAGCACTCTCGGGGAACTACTTGGGCCTCTTCAACCGCTCCACTTCAGGTAACTCCTCCAACCATGTTTTTGCGGTTGAGTTTGATGATTTTAGGAACGAGGAGTTCAACGAGGAGAATGATAACCATGTGGGTGTGGACTTGAATTCGATGATTTCGGTGTATTCGGAGCCTGCAGGGTTCTGGGGTGGGAGAGAAGGTGAGGAATTGGAGGATTTGAAGCTTTCTGATGGTAGAAACTATCAGGTTTGGATTGAGTTTGAGAACTCAGTGATTAATGTTACCATGGCACCAGCAGGGAGAAAGAAGCCTCATAGGCCTTTGATTAGTAAGCCTATGAACCTTTCTTGGGTCCTTTTGGATGAAATGTATGTGGGGTTTTCTGGGGCAACAGGGAGAATGGTGGACAATTGTAGAATCTTGGCTTGGAGTTTTAGCAATTCTAATTTCTCAATTGGTGATGTTTTGAGTACCAAGCATTTGCCCTTGTATGTGCATCCAAAGAGATTGGTGTTTAGATCAAATGGTTTCATAATAGGTGTAACTTTCGGTGTTTTTTTTGTGGGTGGCTTTTGTGCTTTGGTGGTTTTCTTCATTTTGTTCAGAAACAGAAGGGGAGAAAAACAGGAAAACTTTGAAGACTGGGAATTGGAGTATTGGCCACACAGGATTAGCTATCGGGAGATTTGTGATGCAACAAGTGGATTCTCTGAAGAGAAGGTGATTGGGATTGGAACAAGTGGTAAGGTGTACAAGGGGCTTTTGAAGGGAGTAGAAGTTGCGGTGAAGAGCATCAATCACGAGACACGGCACGGAATGAGAGAGTTTCTGGCAGAGATTTCAAGCCTAGGCAGAATGAAACACAGGAATTTAGTGGGTTTCAGAGGTTGGAGCAAAAGAAAAGGAGGAAAACTGATATTGGTTTATGATTACATGGTGAATGAGAGCTTGGACAAAAGGATCTTTGAGTGTGAAGAGACCATGCTTTTGAGTTGGGAAGAAAGAATTAGAGTTTTGCAAAACGTAGCTGATGGAATTTTATATCTACATGAGGGTTGGGATGTTGAGGTCTTGCATAGGGACATCAAAGCTTGTAATGTATTACTTGACAAGGACATGAATGCTAGGTTGGGGGATTTTGGGCTTGCAAGGTTGCATCACCAGGAAAATGTGGCTGACACAAGAGTGATAGGGACCCTGGGGTACATGGCTCCGGAACTAGTCCGAATCGGGCGACCGTCAACTGCGTGTGATGTGTATAGTTTTGGAGTATTGGTTTTAGAAGTGGTGTGTGGGAGAAGACCCATCATAGCAGATCAGCCACCACTGATTGATTGGTTGTTTTCCCATATGGAGAATGGGGAATTGAGTTGTGCTATTGATGAACGTTTGAAGGGTCAAAGTGGATACAATGCTGAGGAAGCTGAGAGGCTGCTTCATTTGGGTTTGTTATGTGTGAGTACAGACCCTGGTGTTAGGCCAACAATGAGGCAAGTGGTGAAAACATTGGAGGGAATAAAATGCACTGAGTGTAACGAAGATTGCATCCATTTGGCTCTGCTTGGAAAAATAAACTCAGCAGCATCATGGTCTAAGAGTTCTACAAGTTCTGCCAATGTAAATTATCCCACCTTTGACGAAATTTTGCAGACCAAGTTTTACTCTACTGCATCTTTGAGCATCTCTTGTCCCAGTCCGCAGCTAGAACCAGAGTTTGTCTCAGAAGGAAGGTGA 2073 0.4366 MSPRTLFFLLSTLQFLSFVSTTEFVYNRNFNSTNVKLYGNATIENSVLKLTNQTFFSIGRAFYPHKIPMKPPNSSSSTLLPFATSFIFSVAPCENFPVAHGFAFVVTPVMSANGALSGNYLGLFNRSTSGNSSNHVFAVEFDDFRNEEFNEENDNHVGVDLNSMISVYSEPAGFWGGREGEELEDLKLSDGRNYQVWIEFENSVINVTMAPAGRKKPHRPLISKPMNLSWVLLDEMYVGFSGATGRMVDNCRILAWSFSNSNFSIGDVLSTKHLPLYVHPKRLVFRSNGFIIGVTFGVFFVGGFCALVVFFILFRNRRGEKQENFEDWELEYWPHRISYREICDATSGFSEEKVIGIGTSGKVYKGLLKGVEVAVKSINHETRHGMREFLAEISSLGRMKHRNLVGFRGWSKRKGGKLILVYDYMVNESLDKRIFECEETMLLSWEERIRVLQNVADGILYLHEGWDVEVLHRDIKACNVLLDKDMNARLGDFGLARLHHQENVADTRVIGTLGYMAPELVRIGRPSTACDVYSFGVLVLEVVCGRRPIIADQPPLIDWLFSHMENGELSCAIDERLKGQSGYNAEEAERLLHLGLLCVSTDPGVRPTMRQVVKTLEGIKCTECNEDCIHLALLGKINSAASWSKSSTSSANVNYPTFDEILQTKFYSTASLSISCPSPQLEPEFVSEGR* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3125 690 PANTHER LECTIN RECEPTOR KINASE 5 673 - -
Gso11g3125 690 Gene3D Phosphorylase Kinase; domain 1 313 424 - -
Gso11g3125 690 Pfam Legume lectin domain 22 262 IPR001220 GO:0030246
Gso11g3125 690 SMART serkin_6 349 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3125 690 Gene3D - 20 270 - -
Gso11g3125 690 CDD lectin_legume_LecRK_Arcelin_ConA 22 261 IPR001220 GO:0030246
Gso11g3125 690 ProSiteProfiles Protein kinase domain profile. 349 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3125 690 SUPERFAMILY Concanavalin A-like lectins/glucanases 20 263 IPR013320 -
Gso11g3125 690 SUPERFAMILY Protein kinase-like (PK-like) 325 617 IPR011009 -
Gso11g3125 690 Gene3D Transferase(Phosphotransferase) domain 1 425 632 - -
Gso11g3125 690 PANTHER - 5 673 - -
Gso11g3125 690 Pfam Protein kinase domain 350 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3125 690 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Gso11g3125 690 ProSitePatterns Protein kinases ATP-binding region signature. 355 376 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3125 Gso-Chr11 47149239 47152378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3125 19 570 Receptor kinase-like Gene Family AT4G04960 54.383 0.0 567
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gso11g3125 Pkinase 4.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3125 - - gmx:100804025 1340.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1737 12 40987380 40989783 Gso11g3125 11 47149239 47152378 GST
Gso11g3125 11 47149239 47152378 Gso12g0942 12 11219509 11221898 PCT
Gso11g3125 11 47149239 47152378 Gso6g2397 6 45586674 45589110 PCT