Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3124 ATGGCTGATCATCAGCAGGGAGATCAACCTTCTTCAACCAAAGGGATCGAAAGAAGGATTGTAGAAAAAAACAGGAGAAACCATATGAAGAACCTCTGTTCCATGCTTAACTCTCTTCTCCCTAACAACAATAACACCAGGGGAAGAGAATTATCACGTGTTGATCAAATAGACGAGGCTATCAACTACATCAAGAACCTAGAGACAAAGGTGAAGATGGCGCAGGAGAAGAAAGAAAGCTTAATATTGCAAAGGAAAAGATCTCGCAGTGGCGGTTCGAGTAGTACTTCTGAAGCACCGAAGATTGAGATTCATGAAGAAGAAAACATAGTGGTCAAGAGTGTCCATTCTTCATCATTCGCTGGAAACTCAATGTTGAATGTTGTGCATGCAGAAATTCAGCAATATTCATTTCTTCTAGAAACAACCGCAATGAGTATTGAGAAATTGAGAAGGATTGTGGACATGCATGGAGGAAATTTTTAG 486 0.4012 MADHQQGDQPSSTKGIERRIVEKNRRNHMKNLCSMLNSLLPNNNNTRGRELSRVDQIDEAINYIKNLETKVKMAQEKKESLILQRKRSRSGGSSSTSEAPKIEIHEEENIVVKSVHSSSFAGNSMLNVVHAEIQQYSFLLETTAMSIEKLRRIVDMHGGNF* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3124 161 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 67 IPR011598 GO:0046983
Gso11g3124 161 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 108 IPR015660 GO:0003700|GO:0006357
Gso11g3124 161 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 107 157 IPR015660 GO:0003700|GO:0006357
Gso11g3124 161 MobiDBLite consensus disorder prediction 1 20 - -
Gso11g3124 161 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 18 87 IPR036638 GO:0046983
Gso11g3124 161 Gene3D - 6 84 IPR036638 GO:0046983
Gso11g3124 161 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 11 108 - -
Gso11g3124 161 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 107 157 - -
Gso11g3124 161 Pfam Helix-loop-helix DNA-binding domain 18 68 IPR011598 GO:0046983
Gso11g3124 161 MobiDBLite consensus disorder prediction 82 102 - -
Gso11g3124 161 Coils Coil 57 84 - -
Gso11g3124 161 SMART finulus 19 73 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3124 Gso-Chr11 47137675 47138671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3124 13 82 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 45.714 1.50e-12 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso11g3124 HLH 1.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3124 - - gmx:100803489 286.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1739 12 41010214 41011556 Gso11g3124 11 47137675 47138671 GST