Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3118 ATGGTGGTGAGGAGTGACAGGTTGAAGAGGGATGTGGCAGATTGTGGTGACAACAACCAAAACGGGTACGTGGAGCAAGAGAAGAAGATAAAAGGGGTGCATATATGCGGTGTTGTCAACGCCGATCTTCATGAGGCCAAGCAGTACCACAGGAGGCACAGGGTGTGTGAGTATCATGTAAAGGCTCAGGTTGTGCTTGTTGATGAGGTTAGACAACGGTTCTGTCAGCAATGTAGCAGATTCCACGAATTAGCTGAATTTGATGACACAAAAAGAAGTTGCCGCAGAAGTTTGGCCGGATACAATGAACGGAGGAGAAAGAATTCAGATCAGTCTCAAGCAGAAGGGTCAAGCCGCAACAAAGGCACAGGGCACCCTCAATTGAAGGACATTACTTGTGGTCAGGCTGATGAGAGGGGGAGAATTCAGATAACAATCCACGAAAATGCTGCTTACAAACATTTCCAGATAAGATGA 477 0.4675 MVVRSDRLKRDVADCGDNNQNGYVEQEKKIKGVHICGVVNADLHEAKQYHRRHRVCEYHVKAQVVLVDEVRQRFCQQCSRFHELAEFDDTKRSCRRSLAGYNERRRKNSDQSQAEGSSRNKGTGHPQLKDITCGQADERGRIQITIHENAAYKHFQIR* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3118 158 ProSiteProfiles Zinc finger SBP-type profile. 31 108 IPR004333 GO:0003677
Gso11g3118 158 SUPERFAMILY SBT domain 40 111 IPR036893 GO:0003677|GO:0005634
Gso11g3118 158 Pfam SBP domain 40 107 IPR004333 GO:0003677
Gso11g3118 158 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 20 158 IPR044817 GO:0003677
Gso11g3118 158 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 20 158 - -
Gso11g3118 158 Gene3D - 32 95 IPR036893 GO:0003677|GO:0005634
Gso11g3118 158 MobiDBLite consensus disorder prediction 102 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3118 Gso-Chr11 47089494 47091301 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3118 40 158 SBP-box Gene Family AT3G15270 56.667 7.35e-35 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso11g3118 SBP 4.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3118 - - gmx:100779599 326.25