Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3117 ATGCCAGCCCAGAAGCGCTCTCTGCCCGAGTCACTCGACGAAGGGGACACTTCGCAGCAGAACCTCTTCCATTCTCGACATGCGAAGCAACAACAACAACAACCAGACCAGCCGCAGGAACACGACGAGGATGAGAACGAAGAAGAAGAAGAAGAAGGAGATGAAGAAGAAGGAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGTAGAAGAAGCGGCGCAAAATGACAACAACGACGAGGAAAAACCACAGGATTCCGACGATATCCCATCTTCTGGCTCTGAAGAAAAACCCGAATTTGTGTATGTGGAACTTCTGGAAATTCGTAAGGATGTCCAATGTCCAATTTGCCTTGGTATTATTAAGAAGACAAGAACCGTTATGGAATGCTTGCACCGTTTTTGCAGGGAATGCATTGACAAATCAATGCGACTAGGGAACAATGAATGCCCTGCTTGTCGCACACATTGCGCCAGTCGTCGTTCCTTGAGAGACGATCCAAATTATGATGCCCTAATTTCTGCTTTATATCCAGATATTGAGAAGTACGAAGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGCAATAAGCAGATTCAAGCTTCAATAGCAAAAGTAGTTCAACGGCAATCTGAAGCATTGGTTAAGAGACGTAAAGATACACCAGGTACATTTGTAACAAGATCACAGCGTAATCAACGAAATAGGAGACAAACTCAAGCAATTGAAGGATCTGAAGATAATGAGGAGGAAAATGACAATAATGAAAAGAACTCATCTTCAGATGATGAACGGAGTACAGAACACCGGCAGAGAAGGCGAAAGAGATGGGCCAGAGTTCGCTCCTCTCAACCCTCATCATCCATGACAAGTCCTGATGGTGGATGCAATGATAGTGATATGGATATAAGTAGAGAAAATCGTGGAATTTCTTCAAGGCAGGTATCAAAACATGGAAAGCTTACTTGGGGAAGGGGTGGATTTAGAAGTAACACTCGGCATGGTAGTGGTGGCAGTAGCAATAGCAAAAGTTCTCGCAGTAGTCGATTATCTAAGTTTGTTGATCATCTCCGCAACTTGGATGAAAACACTGATGAGTTTGATGTCCATCTCATGCTTGTTTCTCTTGACCAACAAAGTACATCAAGTTTGCAGCAACCTTACCTTTGCTGTCGACCAACTTTGTCTGTCAGGCACCTTTACGAACACGTTGCTCGTCAGACACATTTGCCAGTTGAAGGAATTGAGATACTGGCAGTCAAAGGATGCTGCAGTACAAACCGTGACAAGTCAACCAATGAGAATTCAGCCCTGGCATACGATGAGCTATCAACGCTGGTTATTGATCCACACAAAGATGAACTGGAAATTTTGCAAGGACATGAGACTCTGTCAGGGCTTAGATCCAAATGCATATCTAAGATGGGACATTTGATTATTGCATACAATCAGAAGGAGGTATCATAG 1494 0.4391 MPAQKRSLPESLDEGDTSQQNLFHSRHAKQQQQQPDQPQEHDEDENEEEEEEGDEEEGEEEEEEEEEEEEEEEEEVEEAAQNDNNDEEKPQDSDDIPSSGSEEKPEFVYVELLEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDIEKYEEEELEFREEEKNRNKQIQASIAKVVQRQSEALVKRRKDTPGTFVTRSQRNQRNRRQTQAIEGSEDNEEENDNNEKNSSSDDERSTEHRQRRRKRWARVRSSQPSSSMTSPDGGCNDSDMDISRENRGISSRQVSKHGKLTWGRGGFRSNTRHGSGGSSNSKSSRSSRLSKFVDHLRNLDENTDEFDVHLMLVSLDQQSTSSLQQPYLCCRPTLSVRHLYEHVARQTHLPVEGIEILAVKGCCSTNRDKSTNENSALAYDELSTLVIDPHKDELEILQGHETLSGLRSKCISKMGHLIIAYNQKEVS* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3117 497 MobiDBLite consensus disorder prediction 1 104 - -
Gso11g3117 497 ProSitePatterns Zinc finger RING-type signature. 137 146 IPR017907 -
Gso11g3117 497 MobiDBLite consensus disorder prediction 341 357 - -
Gso11g3117 497 MobiDBLite consensus disorder prediction 234 248 - -
Gso11g3117 497 SMART ring_2 121 160 IPR001841 -
Gso11g3117 497 MobiDBLite consensus disorder prediction 83 104 - -
Gso11g3117 497 MobiDBLite consensus disorder prediction 13 35 - -
Gso11g3117 497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 184 IPR013083 -
Gso11g3117 497 MobiDBLite consensus disorder prediction 290 306 - -
Gso11g3117 497 Pfam Zinc finger, C3HC4 type (RING finger) 120 160 - -
Gso11g3117 497 MobiDBLite consensus disorder prediction 40 82 - -
Gso11g3117 497 MobiDBLite consensus disorder prediction 308 322 - -
Gso11g3117 497 MobiDBLite consensus disorder prediction 263 279 - -
Gso11g3117 497 SUPERFAMILY RING/U-box 107 175 - -
Gso11g3117 497 ProSiteProfiles Zinc finger RING-type profile. 121 161 IPR001841 -
Gso11g3117 497 Coils Coil 39 89 - -
Gso11g3117 497 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 1 495 - -
Gso11g3117 497 CDD RING-HC_RING1_like 121 161 - -
Gso11g3117 497 Coils Coil 187 218 - -
Gso11g3117 497 PANTHER OS11G0578200 PROTEIN 1 495 IPR044592 -
Gso11g3117 497 MobiDBLite consensus disorder prediction 221 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3117 Gso-Chr11 47076577 47083179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3117 114 184 C3H Transcription Factor Family AT3G23060 35.135 5.31e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3117 K10695 - gmx:100801911 777.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1742 12 41038694 41050130 Gso11g3117 11 47076577 47083179 GST