Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3116 ATGAGCGGTGTCTGTGCTGAGCAGCACAAATTTTACCCTTCTCACCAACTCCTTTCTCCAAAGAAAGCCCTCAGAGAAATTGACATCCCTCCGAGGAAGCTCCTCACTCGCCGTGCCGCCAAATGCGTCGGTGGCACCGACGTGTACTCTGAGGAAACCATGCAGCAGAAGTTCCTCCCTTCCAACGATTCCGACGAGGACGACCCTTACTCGTCGGACCACTTCCGGATGTTCGAGTTCAAGGTCCGCCAGTGCACCCGCAGCCGGAGCCATGACTGGACCGACTGCCCTTTTGCACATCCGGGCGAAAAGGCACGCCGCCGTGACCCACGGCGGTACCACTACTCAGGAACAGTCTGTCCGGAGTATCGTCGTGGAGGGTGCAGCCGTGATGATGCATGCGAATACGCTCATGGCGTGTTCGAATGTTGGCTGCACCCTTCCAGGTACAGGACAGAGGCCTGTAAGGATGGCAGGAACTGCAAGAGAAAGGTGTGTTTTTTCGCACACACACCTCGCCAGCTGAGAATTTTACCGGTAACATCTTCACCCTCTTCAAATGACATGCCATGCAAGAAGAACCTTAAACAAGTGTTAAACCATGCTTCAAAAACAAACAACAACAACAACTGTTGCTTGTTTTGCCATTGTGGTGCTTCTTCTTCAGCCTCTCCAACCTCCACACTCTTCGGCATGTCGCATTTCTCGCCACCACTATCACCTTCCTCGTCCTCTTCACCACCTCCTTCTCCGTTGAAACCCAGAAACGCGGTTTCTCCTATTTCCCGTTACAGTGCTGTGAATGTGAACCCTCATCACGTGGTGAGTTACAAAGACGTGTTCACTGAATTGGTGAATTCTTTGGAGCGTTTGAGTTTCAACGAGGGTTCACCTGTTTCCGGTGCAAAAGCACCGAACTTTCCTTGGCTTGATGTTTCTCTGAACTGTGAGGAACAGCAACAGCAACAACAAAACCCTTTCATAGTTCCTTCTTTTGGCTGCGAAGATCAGCAGCAACAGAACCAGTTTATTTTTTCACCACCGTCCATTCAGACACCGACAAATGGGAAGTTCTGTAGCAACAGATTCATGGGCAACGACAACAACAACAAGGTTGTCGGTGGTGCTGACGTTAATGGCCCAGATCTGGCGTGGGTGAATGAGTTGCTGATGTAG 1176 0.5094 MSGVCAEQHKFYPSHQLLSPKKALREIDIPPRKLLTRRAAKCVGGTDVYSEETMQQKFLPSNDSDEDDPYSSDHFRMFEFKVRQCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPEYRRGGCSRDDACEYAHGVFECWLHPSRYRTEACKDGRNCKRKVCFFAHTPRQLRILPVTSSPSSNDMPCKKNLKQVLNHASKTNNNNNCCLFCHCGASSSASPTSTLFGMSHFSPPLSPSSSSSPPPSPLKPRNAVSPISRYSAVNVNPHHVVSYKDVFTELVNSLERLSFNEGSPVSGAKAPNFPWLDVSLNCEEQQQQQQNPFIVPSFGCEDQQQQNQFIFSPPSIQTPTNGKFCSNRFMGNDNNNKVVGGADVNGPDLAWVNELLM* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3116 391 SMART c3hfinal6 149 172 IPR000571 GO:0046872
Gso11g3116 391 SMART c3hfinal6 114 140 IPR000571 GO:0046872
Gso11g3116 391 Gene3D - 115 178 - -
Gso11g3116 391 PANTHER UNKEMPT FAMILY MEMBER 26 390 IPR045234 -
Gso11g3116 391 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 26 390 - -
Gso11g3116 391 MobiDBLite consensus disorder prediction 237 257 - -
Gso11g3116 391 MobiDBLite consensus disorder prediction 241 255 - -
Gso11g3116 391 ProSiteProfiles Zinc finger C3H1-type profile. 115 141 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3116 Gso-Chr11 47067150 47068673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3116 45 252 C2H2 Transcription Factor Family AT5G12850 45.714 2.71e-53 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso11g3116 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3116 K23047 - gmx:100801371 793.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1743 12 41057790 41059330 Gso11g3116 11 47067150 47068673 GST