Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3110 ATGGCTCTGTTATTCAAGGATCCGTCGAAGATTTCAGCGTATCGAGATAGAAGGTTCCCCGGAACGCAAGAGGAGTTTGAGCACGCGCTTGTGACCTCAACCACCGTTTACGTGGGGAACATGTCTTTTTACACGACGGAGGAGCAAGTTTACGAGCTCTTCTCGCGTACTGGGGAAATAAAAAAGATCATCATGGGCTTGGACAAGAACACCAAAACGCCCTGCGGCTTCTGTTTCGTTTTATATTATTCTCGTGAAGATACTGAGGATGCTTGCAAATACATAAGTGGGACGATACTTGATGATCGTCCCATTCGAGTTGATTTTGATTGGGGATTTCAGGAAGGAAGACAATGGGGTCGTGGGAGGAGCGGTGGCCAGGTGCGGGACGAGTACCGCACTGATTATGATCCTGGTAGAGGTGGCTACGGGAAGCTGGTTCAGAAAGAGTTAGAAGTACAAAGGCAGCTTGTAGATTATGGTGCTGGTTCTTTGGGTTCTTTTCCACCAGTTATTCCAACTTCCTATGGTAGACATGGTGGAGGAGGTGGTCATGGTCATGGTGGTTCCCATCGACATGGTAGAGATTACTATAGGAAGAGACACCGAGATGATGAGCGCCACACACACGAGTCCTCAAAAAGAACTTCAGATCATGAGTCTCGAAGGAACACTGACCATGAATCTAGACCGGAAAAAAATCCACGGTTTCGTGAGAGTGGTGATTCTGATGAGGACGAGGAAGATGATAGAAAAAGACGGGCTTAA 768 0.474 MALLFKDPSKISAYRDRRFPGTQEEFEHALVTSTTVYVGNMSFYTTEEQVYELFSRTGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYISGTILDDRPIRVDFDWGFQEGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEVQRQLVDYGAGSLGSFPPVIPTSYGRHGGGGGHGHGGSHRHGRDYYRKRHRDDERHTHESSKRTSDHESRRNTDHESRPEKNPRFRESGDSDEDEEDDRKRRA* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3110 255 CDD RRM_NCBP2 36 113 IPR034148 -
Gso11g3110 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Gso11g3110 255 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 1 216 IPR027157 GO:0000339|GO:0005846|GO:0045292
Gso11g3110 255 SMART rrm1_1 35 108 IPR000504 GO:0003723
Gso11g3110 255 MobiDBLite consensus disorder prediction 164 255 - -
Gso11g3110 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Gso11g3110 255 MobiDBLite consensus disorder prediction 124 138 - -
Gso11g3110 255 MobiDBLite consensus disorder prediction 120 140 - -
Gso11g3110 255 MobiDBLite consensus disorder prediction 199 255 - -
Gso11g3110 255 Gene3D - 6 150 IPR012677 -
Gso11g3110 255 SUPERFAMILY RNA-binding domain, RBD 27 144 IPR035979 GO:0003676
Gso11g3110 255 PANTHER NUCLEAR CAP-BINDING PROTEIN SUBUNIT 2 1 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3110 Gso-Chr11 47015172 47018975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3110 33 109 Eukaryotic Initiation Factors Gene Family AT1G49760 27.273 2.49e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3110 K12883 - gmx:100776217 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1749 12 41098631 41102389 Gso11g3110 11 47015172 47018975 GST