Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3108 ATGTTGGCGGTGTCACCTTTGAGGAGCACAAGAGATGAAGGAGGGCAAGGAGAGATATTGGAGAGTGTCTCAATTGGAACCGATGATTTTGCTGACCTTTCAGAAGGGAACTTGCTTGAAAGCATCAACTTCGATGATTTCTTCATGGGAATCAATGATGATGGAGATGTCTTGCCGGATCTGGAGATGGACCCTGAGATGCTTGCTGAGTTCTCCCTCAGTACCGAGGATTCCGAGATAGCCTCATCGTCAGTTTCAGTGGCAAATAACAACAATGATGGGAATAATATAGTTACTACTACTGAAAAACAAGATGATGAGGTTATTATTATAGCATCCAATTCTTCTTCAGATTCGGGTTCGAGTCAAGGGGAGGAGATAGTAAGCAAGAGTGATGAATCAGAGGTGGTGGTGAATCCATCCCCTAAGGAAAGTGAGAAAGGAAGAAAATCATCAAATCATGCATCAAGGAATAATAATCAAGGGAAGAGAAAGGTTAAGGTGGATTGGACCCCAGAATTGCACAGGCGATTCGTGCAAGCAGTGGAGCAGCTTGGAGTGGATAAGGCTGTGCCTTCTAGGATTTTGGAGATTATGGGAATTGACTGCCTCACCCGCCATAACATTGCAAGCCACCTTCAAAAATATAGATCGCACAGGAAGCATTTGCTAGCGCGTGAAGCTGAAGCAGCAAGGTGGAGTCAAAGGAAGCAATTGTTGGGTGCAGCAGGTGCAGGTAGAGGAGGAGGAAGCAAGAGAGAAGTAAACCCTTGGCTTGCACCAACCATGGGTTTCCCTCCCATGACACCAATGCACCACTTTAGACCTTTACATGTATGGGGGCATCACAACATGGACCAGTCTTTCATGCACATGTGGCCTAAACATCCACCATACTCGCCATCGCCGCCTGCATGGCCACCACGAACCGCTCCGTCTCCGCCGTCTCCAGACCCTCTATATTGGCACCAACATCAACTGGCTCCAAACGCGCCAACCACAGGAACACCGTGTTTTCCACAACCTCTGACAACCACGAGATTTGGGTCTCAAACAGTTCCGGGAATCCCACCACGCCATGCAATGTACCAAATTGTAGATCCAGGCATTGGCATCCCGGCCAGCCAACCGCCACCTCGACCCCTTGTCGACTTTCATCCGTCAAAGGAGAGCATAGACGCAGCTATTAGTGATGTTTTATCAAAACCATGGCTGCCACTACCTCTTGGCCTTAAAGCTCCAGCACTTGATGGTGTAATGGGTGAATTACAAAGACAAGGGATTCCCAAAATCCCTCCCTCTTGTGCTTGA 1311 0.4805 MLAVSPLRSTRDEGGQGEILESVSIGTDDFADLSEGNLLESINFDDFFMGINDDGDVLPDLEMDPEMLAEFSLSTEDSEIASSSVSVANNNNDGNNIVTTTEKQDDEVIIIASNSSSDSGSSQGEEIVSKSDESEVVVNPSPKESEKGRKSSNHASRNNNQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAARWSQRKQLLGAAGAGRGGGSKREVNPWLAPTMGFPPMTPMHHFRPLHVWGHHNMDQSFMHMWPKHPPYSPSPPAWPPRTAPSPPSPDPLYWHQHQLAPNAPTTGTPCFPQPLTTTRFGSQTVPGIPPRHAMYQIVDPGIGIPASQPPPRPLVDFHPSKESIDAAISDVLSKPWLPLPLGLKAPALDGVMGELQRQGIPKIPPSCA* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3108 436 Pfam Myb-like DNA-binding domain 168 217 IPR001005 -
Gso11g3108 436 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 165 219 IPR006447 GO:0003677
Gso11g3108 436 MobiDBLite consensus disorder prediction 82 168 - -
Gso11g3108 436 MobiDBLite consensus disorder prediction 82 127 - -
Gso11g3108 436 Gene3D - 162 223 - -
Gso11g3108 436 MobiDBLite consensus disorder prediction 128 153 - -
Gso11g3108 436 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 162 221 IPR017930 -
Gso11g3108 436 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 436 - -
Gso11g3108 436 SUPERFAMILY Homeodomain-like 163 222 IPR009057 -
Gso11g3108 436 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 436 IPR044825 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3108 Gso-Chr11 47000495 47004930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3108 1 331 G2-like Transcription Factor Family AT5G44190 38.655 1.91e-60 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso11g3108 Myb_DNA-binding 5.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3108 - - gmx:100775671 761.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1751 12 41113066 41117511 Gso11g3108 11 47000495 47004930 GST
Gso6g2373 6 45301299 45306567 Gso11g3108 11 47000495 47004930 PCT