Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3105 ATGACTCAGTGCAATTACCCTCAAAACAGCCATAGCATCATTGTGGAGAGGCACAAAGATAGCTTGATCAGAACATGTCCTACATGTGGTCTTCATGTCAAATGCCAAGAGCAGGCTGCTGGAATTCATGACTTGCCTGGACTTCCTGCTGGAGTGAAGTTTGATCCTACTGATCAGGAGATTCTTGAACATTTGGAAGCGAAGGTGCGCTCTGATATTCACAAGCTTCATCCATTAATTGACGAGTTCATCCCTACTCTTGAAGGCGAGAATGGAATCTGCTGTACCCATCCAGAGAAGTTGCCAGGAGTTAGCAAAGATGGGTTGATCCGACATTTCTTTCACAGGCCTTCCAAAGCATACACAACTGGAACAAGGAAAAGGAGAAAGGTGCACACAGATGCAGATGGCAGTGAGACTCGGTGGCACAAAACAGGTAAGACTAGGCCAGTCTTCATCAGTGGCAAGTTAAAAGGGTATAAGAAAATTCTTGTACTTTACACAAACTACAGAAAACAAAGGAAGCCTGAGAAAACAAACTGGGTCATGCACCAGTACCACCTTGGCAACAATGAAGAGGAGAAGGAAGGGGAGTTGGTGGTCTCCAAAGTTTTCTATCAAACACAGCCTAGACAATGTGGCTCACTCATGAAAGACCTGTATCCTGCAAAACTAAGTGGTGAAGGCGTGCATGAGGTAACTAATCATAAGAACACTGGCTATGTCGAGTACTACAATAATTCTTTTGTATCATATGATCAAGGGGACCAGCATAGGTCCAGCACTGCACAATTAGTATCCCATTTCCCTGTCCATGATGGTGCTCCTTTCATTCCTTGA 840 0.444 MTQCNYPQNSHSIIVERHKDSLIRTCPTCGLHVKCQEQAAGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICCTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHTDADGSETRWHKTGKTRPVFISGKLKGYKKILVLYTNYRKQRKPEKTNWVMHQYHLGNNEEEKEGELVVSKVFYQTQPRQCGSLMKDLYPAKLSGEGVHEVTNHKNTGYVEYYNNSFVSYDQGDQHRSSTAQLVSHFPVHDGAPFIP* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3105 279 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 278 IPR044799 GO:0003700
Gso11g3105 279 Gene3D NAC domain 57 211 IPR036093 GO:0003677|GO:0006355
Gso11g3105 279 Pfam No apical meristem (NAM) protein 49 188 IPR003441 GO:0003677|GO:0006355
Gso11g3105 279 ProSiteProfiles NAC domain profile. 48 207 IPR003441 GO:0003677|GO:0006355
Gso11g3105 279 MobiDBLite consensus disorder prediction 121 143 - -
Gso11g3105 279 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 278 - -
Gso11g3105 279 MobiDBLite consensus disorder prediction 127 143 - -
Gso11g3105 279 SUPERFAMILY NAC domain 43 207 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3105 Gso-Chr11 46965947 46968581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3105 24 279 NAC Transcription Factor Family AT4G28500 62.857 1.69e-116 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso11g3105 NAM 3.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3105 - - gmx:100820039 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1754 12 41151319 41154323 Gso11g3105 11 46965947 46968581 GST