Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3097 ATGGGTTACTTGGACGATGATCATGATCATGACACATTCCACGACCACAACGACTTCAACAGAAGGATACTCATCATGGCTATAGTTTCCTTATCAGTGGTATTGGTTCTTGTCTTTACACTTCACCTCTACGCAAGGTTTTTCCTCCGCCGCAGAGCCGCCATATACCAACTCAGCCTCAACGTGGCACACGCACACGCCGAGCCAGACAACAACACAGGGCTCGACCCTGTCCTCATCACCACCCTCCCCACCTTCCCCTTCAAACAACCAAACAACGATTCTGTGGAGTGTGCCGTGTGCTTGAGCGTTCTAGAAGATGGAGAACAAGTGAGGCTTCTTCCCAATTGCAAACACAGCTTCCACGTCGGTTGCATCGACACGTGGCTTGCTTCGCACTCCACGTGTCCCATTTGCCGGACCAAGGCCGAACCGGTCCGGCTCGAACCGCAGCCGCGTGAGGGCCCCACCGGCTCGGTTCTTCTCGATGTTGTTGCACCCACGGCTCCGCTATTGTTTGAAAACGTGGAAGGAACCTTGGATGGTGCTAATAATAATGGGTCACCTAAGGTTAGTGGTTCGAATTCGAGGTTGAGTTCGTTCAGAAGGATTCTTAGTAGGGACAGATCGATGAGGAGGATTCAACCTTCTAGCCATGATGATGTTGAACATGATTTAGAGAGCCAGTGA 690 0.5145 MGYLDDDHDHDTFHDHNDFNRRILIMAIVSLSVVLVLVFTLHLYARFFLRRRAAIYQLSLNVAHAHAEPDNNTGLDPVLITTLPTFPFKQPNNDSVECAVCLSVLEDGEQVRLLPNCKHSFHVGCIDTWLASHSTCPICRTKAEPVRLEPQPREGPTGSVLLDVVAPTAPLLFENVEGTLDGANNNGSPKVSGSNSRLSSFRRILSRDRSMRRIQPSSHDDVEHDLESQ* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3097 229 Pfam Ring finger domain 97 140 IPR001841 -
Gso11g3097 229 PANTHER RING FINGER DOMAIN-CONTAINING 1 229 - -
Gso11g3097 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 146 IPR013083 -
Gso11g3097 229 SMART ring_2 98 139 IPR001841 -
Gso11g3097 229 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Gso11g3097 229 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 1 229 - -
Gso11g3097 229 MobiDBLite consensus disorder prediction 209 229 - -
Gso11g3097 229 CDD RING-H2_PA-TM-RING 97 140 - -
Gso11g3097 229 SUPERFAMILY RING/U-box 92 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3097 Gso-Chr11 46876682 46877893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3097 6 227 C3H Transcription Factor Family AT2G42360 45.643 1.83e-54 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3097 K19038 - gmx:100796057 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1765 12 41248996 41250138 Gso11g3097 11 46876682 46877893 GST