Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3096 ATGGGCATGAAGAGCACTGGGGGAGAGATTGTTCAAGTCCAAGGAGGGCACATTGTTCGGTCCACAGGTAGAAAAGATAGGCACAGCAAGGTTTACACTGCAAAGGGTCCTCGTGATCGAAGGGTTAGGCTCTCAGCACACACTGCTATTCAGTTCTATGATGTTCAAGATCGTTTAGGCTATGATAGACCAAGCAAAGCCGTGGACTGGCTCATCAAGAAGGCCAAGAATGCTATTGACAAGCTTGCTGAGCTTCCTCCATGGCACCCTAATCCTAACACTACTGCTGCAGATGCCGAGAACAACAACAACAACAATGCAGGGTCAAGTGACATGGCCATTGCAGAACAATCAGAGTCTTCTGGTTACAATTTTCAGCTGCAAAGGCAATTAGGTGAGGACCATGATAACCACCACCATTCAGCTTTCATTCCTTCACCTATTGACACTGATGCAATAGCCTTCTTTCCCACAACCACTGCAACCTCCTCCATCAATTTCCAAACCTACCCTCCTGACATAATCTCAAGAACCAACAACTCCACTGAGGATCTTGGCCTTTCCCTTCACTCCTTCCAAGACCCTGGTTTGATTCATCATGGCCAGTCCCAAGCAGGTGCAAATCAAACACCTTCCAATGACCAAACCCTCTTCTCTGGCTCAACTCAAGTGGGGTTTGAGGCCAATTACCCCAGGATTGTGACTTGGAACAGTGATGCAAGCACAGATATGAACAGAACCGGGTTCATGGTTAATTCACCATCAGCACTTCTAGGCCAAGGTGGTTCTGCTGCGTATTCCCAAAGGGGGACCCTTCAGTCCAGTTTCTCACCATCACTTCGTCCTTGGAGTGACATTCCAATGGCTTCATCAGAACATCATCACAAGTCACAACAAGCTTCCATCTTTGGCAGCAGGTTTTTGTCTGATGCATTGCCAGGGTTCTGCATTCCTGCTAGAATCCAAGGAGAGGATGAGGGCCATGGAGTTGGTAACGACAGGCCATCATCTGCTTCTCCTAATTCTCATCACTGA 1035 0.4783 MGMKSTGGEIVQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLAELPPWHPNPNTTAADAENNNNNNAGSSDMAIAEQSESSGYNFQLQRQLGEDHDNHHHSAFIPSPIDTDAIAFFPTTTATSSINFQTYPPDIISRTNNSTEDLGLSLHSFQDPGLIHHGQSQAGANQTPSNDQTLFSGSTQVGFEANYPRIVTWNSDASTDMNRTGFMVNSPSALLGQGGSAAYSQRGTLQSSFSPSLRPWSDIPMASSEHHHKSQQASIFGSRFLSDALPGFCIPARIQGEDEGHGVGNDRPSSASPNSHH* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3096 344 PANTHER TRANSCRIPTION FACTOR TCP4 2 344 - -
Gso11g3096 344 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
Gso11g3096 344 MobiDBLite consensus disorder prediction 323 344 - -
Gso11g3096 344 MobiDBLite consensus disorder prediction 196 215 - -
Gso11g3096 344 MobiDBLite consensus disorder prediction 85 110 - -
Gso11g3096 344 MobiDBLite consensus disorder prediction 94 110 - -
Gso11g3096 344 Pfam TCP family transcription factor 23 129 IPR017887 -
Gso11g3096 344 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 344 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3096 Gso-Chr11 46866154 46869035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3096 8 344 TCP Transcription Factor Family AT3G15030 43.210 7.65e-77 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso11g3096 TCP 6.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3096 - - gmx:100814907 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1766 12 41265291 41268550 Gso11g3096 11 46866154 46869035 GST