Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3088 ATGGAAATGGAAGCCTTTGCCCCACATAGGATTAGTGACGGTTTTCCAGTTTGTTGTGGTGTAATTGGAAGTGGGTATGGTTCATCTTCGTCTCTAGTGTTGGATAAGGAGAAGGGAGAGCTTGTAGAGGCCCCTGTCAAATTGGAACGCAAGGGTGTGTCTCCTGAGAGAAGCATTGAAGCCTTGAAGAACCATAGTGAGGCAGAGAGGAGAAGGAGAGCAAGAATTAATGCACATCTTGATACACTTCGCTCTGTCATTCCTGGTGCTAAGAAGTTGGACAAAGCAACCTTGCTGGGTGAGGTTATTAGACATTTGAAAGAGCTGAAAACGAATGCGACACAAGCTAGTGAAGGCCTAATGATACCAAAGGACAGTGATGAAATAAGAGTTGAAGAACAGGAGGGTGGATTGAATGGTTTCCCTTACTCAATCAAGGCATCACTATGTTGTGAATACAAACCCGGGTTATTGACCGATATAAGACAAGCACTTGATGCACTTCATCTTATGATAATAAGGGCTGAGATTGCAACCTTGGGAGGAAGGATGAATAGTGTGTTTGTGATAATTAGCTGCAAAGAACAAAATATTGAAGATCCCGAGTACCGCCAGTTTCTGGCAGGGTCTGTTCATCAAGCTCTAAGATCAGTGTTAGATAGATTTTCTGTTTCACAGGACATGTTAGAAAGCAGGAAGAGAAGGAGGATTTCTATATTCAGTTCTTCATCTATAGGAGATTTCTTTTGA 750 0.424 MEMEAFAPHRISDGFPVCCGVIGSGYGSSSSLVLDKEKGELVEAPVKLERKGVSPERSIEALKNHSEAERRRRARINAHLDTLRSVIPGAKKLDKATLLGEVIRHLKELKTNATQASEGLMIPKDSDEIRVEEQEGGLNGFPYSIKASLCCEYKPGLLTDIRQALDALHLMIIRAEIATLGGRMNSVFVIISCKEQNIEDPEYRQFLAGSVHQALRSVLDRFSVSQDMLESRKRRRISIFSSSSIGDFF* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3088 249 CDD ACT_UUR-ACR-like 148 219 - -
Gso11g3088 249 Pfam Helix-loop-helix DNA-binding domain 64 109 IPR011598 GO:0046983
Gso11g3088 249 PANTHER TRANSCRIPTION FACTOR BHLH30 1 249 IPR045847 GO:0003700|GO:0006355
Gso11g3088 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 115 IPR036638 GO:0046983
Gso11g3088 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 60 109 IPR011598 GO:0046983
Gso11g3088 249 Gene3D - 56 118 IPR036638 GO:0046983
Gso11g3088 249 SMART finulus 66 115 IPR011598 GO:0046983
Gso11g3088 249 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3088 Gso-Chr11 46781709 46784360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3088 47 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 39.409 1.81e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso11g3088 HLH 4.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3088 - - gmx:100792902 427.172