Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3080 ATGGACTCCATCGCCGGAGCTCCGCCACACGCCGACGTCACCCCTCCGCCGCCTCGGCAGTCGCCGTTCCCCGGCCGGGAAGACTGCTGGTCGGAGGAAGCCACGTTTACGCTCATCGAGGCGTGGGGCCAGCGCCACCTCGAACTCAACCGCGGCAACCTCCGCCAGCGCCACTGGCAGGAGGTCGCCGACGCCGTCAACGCCCGCCACGGCCACGTCAGCACCAAGGCCCGCCGCACCGACGTCCAGTGCAAGAACCGCATCGACACGCTTAAGAAGAAGTACAAGATCGAGAAGGCTAGGGTTTCCGATTCCGGCGACTCCGCCACCACCTGGCCCTTCTTCCGCCGCCTCGATTTTCTCATCGGCGACAATTTCCCCGCCAAGAAGCCCTCCCCGCCCGCCACCGCCGGAATAACTCGCCGGAGCACCCCGCCGGCCAAGTCCCCGCCTTGGGCGGTCATTCCGGTCGGCCCTCGATCCGGAACAAAGAAGCGGCCGGCGGCGGCGAAGCCGGCGTCGGCCTCGCCGGATAGCGTCGCCAACTCGTACTTCCGCCGGAATTTCTCCGTGTTCGCAGCCGCGGCAGCGGCGGCGGCGGCGGCCGACAGCGAGAATTCGAATGGTTCGAAATGGAGCAGTGGGAGTGAGAAAGGGACGATGAAGAAGAAAAGAACAAGAGGAGATTGGGAATTTGGGTACAGAGAGATGGCAGAGGCGTTGGAGAAGTTTGGGGAGATTTATGAGAGAGTGGAGGGAGCGAAACAGAGGCAAATGGTGGAATTGGAGAAACAGAGGATGCAGTTTGCTAAGGATTTGGAAACCCAGAGAATGAAACTCTTCATGGAAACTCAGGTTCACTTGCAGAAAATCAACCGCTCCAAACGTTCTTCTGCTTCTGACAGTGTTTCATAG 915 0.6109 MDSIAGAPPHADVTPPPPRQSPFPGREDCWSEEATFTLIEAWGQRHLELNRGNLRQRHWQEVADAVNARHGHVSTKARRTDVQCKNRIDTLKKKYKIEKARVSDSGDSATTWPFFRRLDFLIGDNFPAKKPSPPATAGITRRSTPPAKSPPWAVIPVGPRSGTKKRPAAAKPASASPDSVANSYFRRNFSVFAAAAAAAAAADSENSNGSKWSSGSEKGTMKKKRTRGDWEFGYREMAEALEKFGEIYERVEGAKQRQMVELEKQRMQFAKDLETQRMKLFMETQVHLQKINRSKRSSASDSVS* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3080 304 MobiDBLite consensus disorder prediction 129 179 - -
Gso11g3080 304 MobiDBLite consensus disorder prediction 203 226 - -
Gso11g3080 304 MobiDBLite consensus disorder prediction 1 27 - -
Gso11g3080 304 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 3 301 - -
Gso11g3080 304 SMART 118neu2 37 128 IPR006578 -
Gso11g3080 304 Pfam Myb/SANT-like DNA-binding domain 27 120 IPR044822 -
Gso11g3080 304 Gene3D - 30 97 - -
Gso11g3080 304 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 3 301 IPR044823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3080 Gso-Chr11 46683096 46687852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3080 220 291 Trihelix Transcription Factor Family AT3G14180 45.205 5.63e-14 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso11g3080 Myb_DNA-bind_4 6.2e-26 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3080 - - gmx:100811154 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1783 12 41452118 41457363 Gso11g3080 11 46683096 46687852 GST