Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3079 ATGGAGGAGACACGAGAAGATGCAGGGCCGGCAGAGCAAGGGCCATCTAATGTGTTGTGGTGGCCTTCAGATTTTGTTGAAAAATTTGGATCTGTTTCTTTGGGTTCTCAAGATGAGACCTTAAGTAATAAGGAATCTCCTCGACATGTTGTCGAAGATGTGCTGTCTTCTCTGAAAGCATCACAAACACTCTGGCAGACTGGAATGCTTTCAGAACCAATACCAAATGGTTTTTACTCAGTCATTCCGGAGACAAGACTCAAAGAACTTTTTGATAGTATTCCTACCTTGGACGAACTTCATGCTCTGGGTGGAGAGGGTTTTAAGGCTGATATCATTCTTGTGGATTCAGAGAAAGATAAAAAGCTATCCATGTTAAAGCAATTAATTATGGCATTAGTTAGAGGATTAAACGCAAATCCAGCTGCCATAATTAAGAAGATAGCTGGATTAGTTTCTGATTTTTATAAGCGTCCCAATGTGGAAAGTCCTGCAAAAGCTGCACTAGATGAAACCTCTCACATGTTTGAGAATCGAGGAGTCCAGATGCTGGGGCAAATAAAGCATGGTTCTTGCCGTCCTCGAGCTATCTTATTTAAAGTATTAGCTGATACCGTTGGTCTTGAAAGTAGGCTCATGGTGGGCTTGCCAAATGATGGAGCTATTGAATGTCAAGATTCATACAAGCATATGTCTGTGATAGTCGTATTAAATTCTCTGGAAATGCTGGTTGATCTTATGCGATTTCCAGGCCAATTGTTACCACGATCAACCAAGTCAGTTTTTATGACTCACATTTCTGCAGGAGAGAGTGATTCAGCAGAAAATGATTCTTGTGATTCACCATTAGAACCAAACAGCCCTTTATTTGGGGTTTCAGAGAGTGCTGAGAAGGAGGAAAACCTCCAATTCCATAGAAGATTTGAAGCATCTTCGAATGTATCAGGCCTTTCCTTGAGAAACGTGATGTTACGATCAAATAGCAATTTAAGTTTGTCACATAGTGAACCCAACATTGCTACTGCATTTGGTCGGCGTAGTCGGAGAAAGGTCATTGCTGAACAGAGGACAGCTAGTTCAAGTCCAGAACATCCATCATTTCGAGCACGTGGAAGGTCCATGCTTAGTGGTGATAGGACAACGTTTAGAGATTTTACCGATGATCAGGCTACATCAAGATCCAGCTATAGGTCAGATGGCACATCCTCGTCAGAAGCTCGTCGGATACGAAGAAGAAGCATCAGCATTACACCAGAGATTGGAGATGATATCGTAAGGGCTGTACGGGCAATGAATGAAACTCTGAAGCAAAACCGTCTCTTGAGAGAACGAGGGGATGATAACTCATTCCCCAATTCTCCAAACAATAGTAGTAGTGATGCAAATCTTCAGAAAAATGTGTCAAATTTCCATCTTGATGGCCATGATGAAAGATCTGCCCTATATTCTTTTCAGCGTGACCAAGGAACTTCACAAAAGGCAATGTCATTACCATCTTCACCACATGATTATAGAGGCCAGGCTTCTGAGAGAAGTGGGCCATCAAGATACGGAGTGAATGATGAAATGGAGTCAACATGGAATAAAGTACTGGAATCTCCAATGTTCAATAATAAACCTCTGTTACCATATGAAAAATGGAACATTGACTTCTCAGAATTGACTGTTGGAACTCGCGTAGGGATAGGTTTCTTTGGAGAAGTTTTCCGTGGCATATGGAATGGCACAGATGTTGCAATCAAGGTTTTTCTAGAGCAAGATTTAACTGCTGAAAATATGGAAGACTTTTGCAACGAGATATCTATTCTGAGCCGGCTCCGACATCCTAATGTTATCTTGTTTCTTGGTGCATGCACAAAGCCTCCACGCTTGTCAATGGTTACAGAATATATGGAGTTGGGATCATTGTATTACTTGATGCATTTGAGCGGTCAAAAGAAAAAGCTTAATTGGCGGAGAAGACTACGGATGCTGCGTGACATATGCAAGGGTTTGATGTGCATACACCGAATGAAGGTTGTTCACCGTGATCTGAAAAGTGCAAATTGTCTAGTGAATAAGCATTGGACCGTCAAAATATGTGATTTTGGGCTTTCAAGAATAATGACAGAATCTCCAATGAGAGATTCTTCCTCAGCTGGAACTCCAGAATGGATGGCTCCTGAGCTTATTCGAAATGAACCATTCACAGAAAAATGTGATATCTTCAGCCTTGGGGTGATAATGTGGGAACTCTGCACCTTGAACAGACCATGGGAAGGAGTACCACCTGAGAGGGTGGTTTATTCCGTTGCGCATGAGGGTTCCAGATTGGAGATACCAGAAGGCCCTCTAGGCAGGCTGATTTCAGAGTGTTGGGCAGAATGTCATCAACGGCCAAGCTGTGAGGAGATTCTTTCTCGTTTGGTGGACATCGAGTACTCCTTGTGCTGA 2433 0.4238 MEETREDAGPAEQGPSNVLWWPSDFVEKFGSVSLGSQDETLSNKESPRHVVEDVLSSLKASQTLWQTGMLSEPIPNGFYSVIPETRLKELFDSIPTLDELHALGGEGFKADIILVDSEKDKKLSMLKQLIMALVRGLNANPAAIIKKIAGLVSDFYKRPNVESPAKAALDETSHMFENRGVQMLGQIKHGSCRPRAILFKVLADTVGLESRLMVGLPNDGAIECQDSYKHMSVIVVLNSLEMLVDLMRFPGQLLPRSTKSVFMTHISAGESDSAENDSCDSPLEPNSPLFGVSESAEKEENLQFHRRFEASSNVSGLSLRNVMLRSNSNLSLSHSEPNIATAFGRRSRRKVIAEQRTASSSPEHPSFRARGRSMLSGDRTTFRDFTDDQATSRSSYRSDGTSSSEARRIRRRSISITPEIGDDIVRAVRAMNETLKQNRLLRERGDDNSFPNSPNNSSSDANLQKNVSNFHLDGHDERSALYSFQRDQGTSQKAMSLPSSPHDYRGQASERSGPSRYGVNDEMESTWNKVLESPMFNNKPLLPYEKWNIDFSELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMVTEYMELGSLYYLMHLSGQKKKLNWRRRLRMLRDICKGLMCIHRMKVVHRDLKSANCLVNKHWTVKICDFGLSRIMTESPMRDSSSAGTPEWMAPELIRNEPFTEKCDIFSLGVIMWELCTLNRPWEGVPPERVVYSVAHEGSRLEIPEGPLGRLISECWAECHQRPSCEEILSRLVDIEYSLC* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3079 810 ProSiteProfiles Protein kinase domain profile. 554 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3079 810 Gene3D Phosphorylase Kinase; domain 1 547 632 - -
Gso11g3079 810 Pfam Protein tyrosine and serine/threonine kinase 555 802 IPR001245 GO:0004672|GO:0006468
Gso11g3079 810 Gene3D Transferase(Phosphotransferase) domain 1 633 808 - -
Gso11g3079 810 CDD STKc_MAP3K-like 560 802 - -
Gso11g3079 810 ProSitePatterns Protein kinases ATP-binding region signature. 560 581 IPR017441 GO:0005524
Gso11g3079 810 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 27 808 - -
Gso11g3079 810 SMART serkin_6 554 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3079 810 MobiDBLite consensus disorder prediction 448 463 - -
Gso11g3079 810 MobiDBLite consensus disorder prediction 387 402 - -
Gso11g3079 810 MobiDBLite consensus disorder prediction 437 463 - -
Gso11g3079 810 MobiDBLite consensus disorder prediction 485 506 - -
Gso11g3079 810 Pfam Ethylene-responsive protein kinase Le-CTR1 59 253 - -
Gso11g3079 810 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 27 808 - -
Gso11g3079 810 SUPERFAMILY Protein kinase-like (PK-like) 528 802 IPR011009 -
Gso11g3079 810 ProSitePatterns Serine/Threonine protein kinases active-site signature. 673 685 IPR008271 GO:0004672|GO:0006468
Gso11g3079 810 MobiDBLite consensus disorder prediction 352 410 - -
Gso11g3079 810 MobiDBLite consensus disorder prediction 485 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3079 Gso-Chr11 46664459 46679642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3079 1 810 MAP Kinase Kinase Kinase AT3G58640 72.473 0.0 1209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-1 Gso11g3079 PK_Tyr_Ser-Thr 5.4e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3079 - - gmx:100803469 1505.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1784 12 41462928 41479271 Gso11g3079 11 46664459 46679642 GST