Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3077 ATGGATGAGACAATTTGCGTATCTGAAGAAGATCATCATAAGAGTGGAAGTAGTAGCAAACCCTCTTCTCCAACTCTTAGAAGAAAACGTTCATTTTTCGATTTGAATGAAGAAGCTGTGGATGGTGGTGGAGATGATAGCACCAGTGATGATGATGGCCTCATGACTAGCAATGGCATTTCATCACAAGAAGGTAATTTGAGTAGCAACAATAGCTCTAGTGAAGAAGGGAAAGAGCGTGCATCTACTGTTAGACAATATGTGCGGTCCAAAATGCCAAGGCTTCGTTGGACTCCTGACCTCCATTTAGCTTTTGTGCATGCTGTTGAGAGGCTTGGTGGACAAGAAAGAGCAACGCCTAAGTTGGTTCTCCAGTTGATGAATGTGAAAGGACTCAGCATTGCACATGTAAAGAGCCATTTGCAGATGTATCGAAGTAAAAAGCTTGATGAGTCCGGCCAAGTTTTACCCCACAATAGGGCAATGCAAGGAAGGCATAGTATTTTTGATATGTACGGAAGACTTAATGCCCCACGACACTTTGGGAATGATAATAGAAACTATTTGCCATCATCTCTACTGTTGGAACAAAGACCTTATGAAAGTGGTCATGGTTCTTCAAGATTACACCCAACAGCACTCTTCAATAGTCACATGATAATAAGATCAAGTTCAGGGTGGGACAAAGATTTATATAATTATCAGTATCAACGTAGTTTCTGCAGTCCTAACTTCACTGGCCACGCCAAGTTTGATGCTGAGGCTCATGATGTGAAAAATCGGATGCCAGAATTCATAAATCAGGTTCAAATATGGAAACAAGGTGACATCAAAGACCAATTAGAGAGGTTGAATGAGAAGAAAGGGTCCCCAAATTTCTTGGAACTAAAACTAAGTCAAGAATATTCAAGAAATGTTAGAGATCACCAGATGAACAAAGACTCAGAAAGTGAACAAGAAACTATTACGAGACTCTCTCTTTCGTTGTTTACTTCGTCCTCATCCTCAAATTCATCACAACTAGCGCAAGGTAGTGAAAAGCAAAAAGATAATACCCATGTTGAGAGTTTTTGTTTTCAAAATTATGCACCAAGGAGTCATTTGGGATGA 1110 0.4009 MDETICVSEEDHHKSGSSSKPSSPTLRRKRSFFDLNEEAVDGGGDDSTSDDDGLMTSNGISSQEGNLSSNNSSSEEGKERASTVRQYVRSKMPRLRWTPDLHLAFVHAVERLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKLDESGQVLPHNRAMQGRHSIFDMYGRLNAPRHFGNDNRNYLPSSLLLEQRPYESGHGSSRLHPTALFNSHMIIRSSSGWDKDLYNYQYQRSFCSPNFTGHAKFDAEAHDVKNRMPEFINQVQIWKQGDIKDQLERLNEKKGSPNFLELKLSQEYSRNVRDHQMNKDSESEQETITRLSLSLFTSSSSSNSSQLAQGSEKQKDNTHVESFCFQNYAPRSHLG* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3077 369 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 93 148 IPR006447 GO:0003677
Gso11g3077 369 MobiDBLite consensus disorder prediction 332 352 - -
Gso11g3077 369 Gene3D - 92 149 - -
Gso11g3077 369 Pfam Myb-like DNA-binding domain 95 145 IPR001005 -
Gso11g3077 369 MobiDBLite consensus disorder prediction 50 77 - -
Gso11g3077 369 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 44 350 IPR044848 GO:0003700
Gso11g3077 369 MobiDBLite consensus disorder prediction 1 85 - -
Gso11g3077 369 SUPERFAMILY Homeodomain-like 91 147 IPR009057 -
Gso11g3077 369 MobiDBLite consensus disorder prediction 1 17 - -
Gso11g3077 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 149 IPR017930 -
Gso11g3077 369 PANTHER MYB-LIKE HTH TRANSCRIPTIONAL REGULATOR FAMILY PROTEIN 44 350 - -
Gso11g3077 369 MobiDBLite consensus disorder prediction 332 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3077 Gso-Chr11 46642795 46646616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3077 84 215 G2-like Transcription Factor Family AT2G42660 53.623 4.14e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso11g3077 Myb_DNA-binding 5.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3077 - - gmx:100789731 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1786 12 41499861 41504273 Gso11g3077 11 46642795 46646616 GST