Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3048 ATGGTTTCCCCGGAAAACAGCAATTGGCTGTTCGATTACCCGTTGATCGACGACGACGTTATTCCCGTCGGCGACTCCTCCTTCGCCGTCTCCGCTTCCACCTTCTCCTGGCCCCCACCTCCCGCCAATGTCAGTGTCGAAATTGATACTTCGCTTGGGGATTCTGATGGCCTAAAAAATCCTGCTTTGAAGAAAAGGACTAAATCTGATTCAAGTACTGCTTCTAGCTCCAAAGCGTGTCGGGAGAAGTTGAGGAGGGATAGGCTTAATGACAAGTTTGTTGAATTGGGCTCCATCTTGGAGCCCGGAAGGCCTCCCAAAACAGACAAGGCTTCCATTCTGATTGATGCTGCCCGAATGGTGACACAGCTGCGGGATGAAGCCCTGAAGTTGAAAGACTCAAATACGAGTCTTCAAGAGAAGATTAAAGAGTTAAAGGCTGAGAAGAATGAACTTCGTGATGAGAAACAGAGGCTTAAGGCAGAGAAAGAGAAGTTGGAGGTGCAGGTAAAATCAATGAATGCTCAACCTGCTTTCTTGCCACCCCCTCCTGCAATCCCTGCTGCATTTGCTCCACAAGGCCAAGCCCCTGGCAACAAGTTGGTGCCTTTCATCAGCTATCCGGGAGTTGCCATGTGGCAATTTATGCCTCCGGCCGCCGTGGATACCTCACAGGATCATGTACTCCGTCCACCGGTTGCCTAA 705 0.5035 MVSPENSNWLFDYPLIDDDVIPVGDSSFAVSASTFSWPPPPANVSVEIDTSLGDSDGLKNPALKKRTKSDSSTASSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKASILIDAARMVTQLRDEALKLKDSNTSLQEKIKELKAEKNELRDEKQRLKAEKEKLEVQVKSMNAQPAFLPPPPAIPAAFAPQGQAPGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3048 234 Gene3D - 76 153 IPR036638 GO:0046983
Gso11g3048 234 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 234 - -
Gso11g3048 234 Pfam Helix-loop-helix DNA-binding domain 77 124 IPR011598 GO:0046983
Gso11g3048 234 Coils Coil 121 176 - -
Gso11g3048 234 PANTHER BHLH TRANSCRIPTION FACTOR 1 234 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Gso11g3048 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 148 IPR036638 GO:0046983
Gso11g3048 234 CDD bHLH_AtILR3_like 80 153 - -
Gso11g3048 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 124 IPR011598 GO:0046983
Gso11g3048 234 CDD bZIP 139 171 - -
Gso11g3048 234 MobiDBLite consensus disorder prediction 46 81 - -
Gso11g3048 234 SMART finulus 79 130 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3048 Gso-Chr11 46330418 46332915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3048 1 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 68.880 2.61e-112 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso11g3048 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3048 - - gmx:100801742 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1815 12 41865685 41868094 Gso11g3048 11 46330418 46332915 GST
Gso15g0540 15 4823326 4826609 Gso11g3048 11 46330418 46332915 GST
Gso11g3048 11 46330418 46332915 Gso12g1130 12 16030030 16033854 PCT
Gso11g3048 11 46330418 46332915 Gso6g2214 6 42784664 42788864 PCT
Gso12g1130 12 16030030 16033854 Gso11g3048 11 46330418 46332915 PCT
Gso6g2214 6 42784664 42788864 Gso11g3048 11 46330418 46332915 PCT