Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3040 ATGCCAACTGTGTGGTTCTCTTTGAAGAGGTCTCTACACTGCAAATCAGAGCCATCAGATGTTCATGACCCCAAAACAAGGAAGCAGTTAACCACAATCTTGACCAAAAAGGGAGGAGGGTCAAGTAGGTCAGGTTGTTCAAGGTCCATAGCAAATCTCAAAGATGTAATCCATGGTAGCAAGAGGCATCTAGAGAAGCCACCAAGTTGCAGCCCAAGATCCATAGGTAGCAGTGAGTTTCTCAACCCAATAACTCATGAAGTGATCCTAAGCAACTCAAGGTGTGAGCTGAAAATCACTGGCTATGGAGGTTTCCAAGAAGGAGGGGTTGGAAGTGATGGTGGAGGTGGTGGTGCCAATAATGGGGGTGTCAATAATAGTAGTGATTTGAGTACCTTTGTTGGCACTTTAAGGCCTGGCACTCCTGGCCCTGGAGGGCACCCTACAATGCACTACTTCAACCCTTCTTTTAGGACTTCATCCACTCCTCCAAGGAAATCTCCTTTCCTTTCATCAGATAAAGAAGGGTCAGGTTTGCATGGTGTTGGAGTTCTTGGACCTCATTCTAGCACAAGGGTACCTCTTGAGACAGATTCAAATGTGTCTTCCACTGTCACTTGCCACAAATGTGGAGAGCAATTCAACAAATGGGAAGCTGCTGAAGCTCATCATCTCTCCAAGCATGCTGTTACTGAACTTGTGGAAGGTGATTCATCAAGGAAAATAGTGGAGATAATATGCAGGACTAGCTGGTTGAAGTCTGAGAACCAATGCGGTAGAATTGAGAGAGTTTTGAAAGTGCATAACATGCAAAAGACACTGGCTAGGTTTGAGGAGTATAGAGAGTTGGTGAAAATCAAAGCTAGTAAACTCCCCAAGAAACATCCAAGGTGCCTTGCTGATGGCAATGAGCTTTTGAGGTTCTATGGAACCACTGTTGCATGCTCTCTTGGTCTCAGTGGCTCTTCCAGCTTGTGTTTATCTGAAAAGTGTTGTGTTTGTAGAATCATCAGAAATGGGTTTTCTGCCAAAGAGGAACTCAAGGGTGGAATAGGTGTTTTCACTACTTCCACAAGTGGAAGGGCTTTTGAATGTATTGAGGTTTTTGACCATGACCCTTCATTGAGAAAAGCACTTATAGTATGCAGAGTCATTGCTGGCAGGGTCCATAGACCTCTGGAGAACATTCAGGAAATGGCAGGACAAACAGGCTTTGATTCGTTGGCTGGGAAAGTTGGTCTTTATTCAAATATTGAGGAGCTTTATTTGCTCAATGCTAGAGCTCTTCTTCCTTGCTTTGTGGTAATTTGCAAGCCATGA 1320 0.4432 MPTVWFSLKRSLHCKSEPSDVHDPKTRKQLTTILTKKGGGSSRSGCSRSIANLKDVIHGSKRHLEKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGYGGFQEGGVGSDGGGGGANNGGVNNSSDLSTFVGTLRPGTPGPGGHPTMHYFNPSFRTSSTPPRKSPFLSSDKEGSGLHGVGVLGPHSSTRVPLETDSNVSSTVTCHKCGEQFNKWEAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQCGRIERVLKVHNMQKTLARFEEYRELVKIKASKLPKKHPRCLADGNELLRFYGTTVACSLGLSGSSSLCLSEKCCVCRIIRNGFSAKEELKGGIGVFTTSTSGRAFECIEVFDHDPSLRKALIVCRVIAGRVHRPLENIQEMAGQTGFDSLAGKVGLYSNIEELYLLNARALLPCFVVICKP* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3040 439 Gene3D - 220 438 - -
Gso11g3040 439 ProSitePatterns Zinc finger C2H2 type domain signature. 207 228 IPR013087 -
Gso11g3040 439 SUPERFAMILY ADP-ribosylation 230 438 - -
Gso11g3040 439 PANTHER - 2 439 - -
Gso11g3040 439 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 439 - -
Gso11g3040 439 MobiDBLite consensus disorder prediction 153 168 - -
Gso11g3040 439 MobiDBLite consensus disorder prediction 113 177 - -
Gso11g3040 439 MobiDBLite consensus disorder prediction 119 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3040 Gso-Chr11 46275896 46278291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3040 1 439 C2H2 Transcription Factor Family AT5G54630 67.094 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso11g3040 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3040 - - gmx:100800127 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0546 15 4854059 4856197 Gso11g3040 11 46275896 46278291 GST