Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3036 ATGCCATCATCTTTTAGTATGGATTCGCAACAGCTCTTCAGTTTCGAATTACCTTACATGTCATCTTTACCCACCGTTCCATCGCTTCTTGGATCCTTGAAATATGACACAGGAAACTCACCTAATTCACCCTTCTCCACTTATTTTGATTCTGACACTCTTTCGGCATTGAGTGACGGCCAGGAGCAATACAGCCCTGGAGAAATCCTCTCTGGTGTCAGCCCCTCTTGTAACTCTTCTCTGGAAACCAACCATTATATGTATAGATCAGTCTCCACTTTGGACAGTTTCCCATTATATTCTGATAGGAACTCTCTTCTACAGACTATGAGTTCTAATCAGAAAATCCAACATGCTTTGCTGGAGCTAGAAACTGCTCTGATGGCACCTGATGACGATCAAGTTAACACACCGAATACATTGGCCGAGAGCAGCAGGCCAATGGCATCAGGCCAGAGATCCAGGTCCTGGAGCAATGAGAACCATGTGTCACAATATACTCAAACTCAGCCATCATATGCAACTGCCAATATGCAGTCAAGTGAAGTTGTGCACGTAGAGAAACGGCAAAAGTTGATGGAAGAAGCAACGCTACAAGATTTCCCACCAAACAATTTGAAGCAGTTGCTGATTGCATGTGCCAAAGCCCTGTCTGAAAACAACACGAAAGATTTTGATCAATTGGTAGGAAAGGCTAAAGATGCTGTGTCCATCAATGGGGAGCCAATCCAGCGGCTTGGTGCTTACATGGTAGAAGGGCTTGTTGCAAGGATGCAAGCATCGGGGAATAGCATCTATCATGCCCTCAGGTGCAGAGAGCCTGAAGGTGAAGAGTTACTCACTTACATGCAACTGTTGTTCGAAATCTGCCCCTACTTAAAATTTGGTTACATGGCTGCCAATGGAGCCATTGCGCAAGCATGCAGAAACGAGGATCACATACACATCATAGACTTCCAAATTGCTCAGGGAACTCAATGGATGACTCTTCTTCAAGCCCTTGCTGCAAGACCTGGTGGTGCTCCCCATGTTCGGATCACAGGGATTGATGATCCTGTTTCCAAATATGCCCGTGGCGACGGACTAGAAGTTGTTGGGAAAAGGTTGGCCTTGATGTCTGAGAAATTTGGCATCCCAGTTGAGTTTCATGGAGTTCCTGTTTTTGCTCCAAATGTGACAAGGGAAATGCTTGATATCAGGCCAGGAGAGGCCTTGGCTGTGAATTTTCCCTTGCAACTCCATCACACAGCTGATGAGAGTGTTCATGTGAGCAACCCAAGGGATGGACTTCTGAGATTGGTAAGGTCACTTTCTCCCAAGGTGACCACACTGGTGGAGCAGGAATCAAACACAAACACAACCCCTTTCTTCAACAGGTTCATTGAAACCTTGGATTACTACTTGGCAATCTTTGAGTCCATTGATGTCACCCTCCCAAGAGATAGCAAGGAGAGGATTAATGTGGAGCAACATTGTCTGGCCAGGGATATTGTGAATATCATTGCTTGTGAAGGCAAGGAAAGGGTTGAGAGACATGAACTGTTCGGCAAGTGGAAGTCGAGGTTAACGATGGCCGGCTTCCGTCAGTGTCCTTTGAGTTCTTATGTGAATTCTGTCATAAGAAGCCTTTTGATGTGCTATTCAGAACACTATACACTGGTGGAGAAGGATGGAGCCATGTTGTTGGGGTGGAAGGACAGAAATTTGATATCAGCTTCAGCATGGCATTGCTAA 1734 0.4562 MPSSFSMDSQQLFSFELPYMSSLPTVPSLLGSLKYDTGNSPNSPFSTYFDSDTLSALSDGQEQYSPGEILSGVSPSCNSSLETNHYMYRSVSTLDSFPLYSDRNSLLQTMSSNQKIQHALLELETALMAPDDDQVNTPNTLAESSRPMASGQRSRSWSNENHVSQYTQTQPSYATANMQSSEVVHVEKRQKLMEEATLQDFPPNNLKQLLIACAKALSENNTKDFDQLVGKAKDAVSINGEPIQRLGAYMVEGLVARMQASGNSIYHALRCREPEGEELLTYMQLLFEICPYLKFGYMAANGAIAQACRNEDHIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSKYARGDGLEVVGKRLALMSEKFGIPVEFHGVPVFAPNVTREMLDIRPGEALAVNFPLQLHHTADESVHVSNPRDGLLRLVRSLSPKVTTLVEQESNTNTTPFFNRFIETLDYYLAIFESIDVTLPRDSKERINVEQHCLARDIVNIIACEGKERVERHELFGKWKSRLTMAGFRQCPLSSYVNSVIRSLLMCYSEHYTLVEKDGAMLLGWKDRNLISASAWHC* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3036 577 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 20 576 IPR005202 -
Gso11g3036 577 Pfam GRAS domain family 206 575 IPR005202 -
Gso11g3036 577 MobiDBLite consensus disorder prediction 132 166 - -
Gso11g3036 577 ProSiteProfiles GRAS family profile. 197 576 IPR005202 -
Gso11g3036 577 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 20 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3036 Gso-Chr11 46238820 46241668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3036 205 575 GRAS Transcription Factor Family AT1G50600 62.803 4.86e-174 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso11g3036 GRAS 2.8e-129 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3036 - - gmx:100799073 1157.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1827 12 41960674 41964088 Gso11g3036 11 46238820 46241668 GST
Gso11g3036 11 46238820 46241668 Gso12g1139 12 16442147 16445796 PCT
Gso11g3036 11 46238820 46241668 Gso6g2207 6 42655929 42659502 PCT
Gso12g1139 12 16442147 16445796 Gso11g3036 11 46238820 46241668 PCT
Gso6g2207 6 42655929 42659502 Gso11g3036 11 46238820 46241668 PCT