Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3029 ATGGCAGATAATGATCAATTTCAAGCAAGTGGGAACTGGTGGGAAACAGCAAGAAGCGTGAGGTATGAGAGCGGAGCATCACAGTCATCTTCCTCAGCCATCACCAACATAGGCAACAACTTTGGTTGGCAACAAGGTTCTGATATGGCAGACATGAAGCCAAGGTCTTCCATGGATTCTTCTTCTGTGGTTTTCCATGACACACAGAATAATAAGCTTCAGCAACCAGATTCTGCCACTTCAACTGACCCCAACTTGCATATGATGGGGCTAGGCCTTTCTTCCCAGACCATGGATTGGAATCAAGCATCTTTGTTAGGAGAGAAGGGTACGGAGAACAGTTTCCGGTCGATGCTGCAAGAGAATTTGAGCTCATCAAGGACCAATTTTCAGCAAGAAACTGGGAATATGGGGTTGTCTCAACAAGTTCAATGGAGGTCAGAGAAGATGTTCTCTTCAGAGTCTTCAACCAATGAGTTCAAGCAAGTGAATAATAGGGGTGGTGGTGGCTTCTCTTTGGATCAAAGCCAGTTTAGTCCTCAATATAGCTCTGGGGACAGCACAGTGACAAGCCAAGGGTTACCCTCTTCTAACTTTCAGATTGATTCTTCAGCCTTATATGGGACCCCTTCAATCTTGCAAGGACTATTGGGACCTGATCACAATAACCAACCCCAACAACAACAACCTATGAGTTTTCCATACCAAACAACAAGCTATGGGTTGAACTCTAATGAGTTGGTTCCTTCTTGGTCCAAAGTTCCTCAATTCTTGAGAGCTTCACCTCCAAAACAACCACCCAATAACCAGTTGCATTTCACTAACAACGCAACCTTTTGGAATGATTCTGAGGCTGCAAACAACAAAGATGTTCGCCCCAGCTTCTTCCCCTCATTGCAACCCCCTTTCTCTACGCCAAATTTTGAAGTACAGTCAAAGAATATATCAGAAGTTAGGGAGTCAGGTACCGTGGTAAAGAAAAGTGGGAATGAGCCAGCACCCAAAAGGACCCGTAACGAATCACCATCTCCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTGTCGCCTTTCGGAAAGACTGATACAGCCTCAGTGCTCTCTGAAGCCATTGAATACATCAAATTCCTCCACGAACAGGTCACTGCTTTAAGTACCCCGTATATGAAAAGTGGAGCTCCAATGCAGATTCAACAGAATTCTGGCAAATCTAAGGAAGCTGAGGGTCCAAAGCAGGATCTAAGAAGCCGAGGGCTATGCTTGGTGCCTGTTTCGAGTACATTTCCCGTGACTCATGAAACCACAGTTGATTTTTGGACACCAACATTCGGAGGAACTTCTAGATAA 1380 0.45 MADNDQFQASGNWWETARSVRYESGASQSSSSAITNIGNNFGWQQGSDMADMKPRSSMDSSSVVFHDTQNNKLQQPDSATSTDPNLHMMGLGLSSQTMDWNQASLLGEKGTENSFRSMLQENLSSSRTNFQQETGNMGLSQQVQWRSEKMFSSESSTNEFKQVNNRGGGGFSLDQSQFSPQYSSGDSTVTSQGLPSSNFQIDSSALYGTPSILQGLLGPDHNNQPQQQQPMSFPYQTTSYGLNSNELVPSWSKVPQFLRASPPKQPPNNQLHFTNNATFWNDSEAANNKDVRPSFFPSLQPPFSTPNFEVQSKNISEVRESGTVVKKSGNEPAPKRTRNESPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTALSTPYMKSGAPMQIQQNSGKSKEAEGPKQDLRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGTSR* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3029 459 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 9 448 - -
Gso11g3029 459 SMART finulus 350 394 IPR011598 GO:0046983
Gso11g3029 459 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 339 388 IPR011598 GO:0046983
Gso11g3029 459 CDD bHLH_AtbHLH_like 345 396 IPR045239 -
Gso11g3029 459 MobiDBLite consensus disorder prediction 403 425 - -
Gso11g3029 459 Gene3D - 349 411 IPR036638 GO:0046983
Gso11g3029 459 MobiDBLite consensus disorder prediction 151 193 - -
Gso11g3029 459 MobiDBLite consensus disorder prediction 320 346 - -
Gso11g3029 459 PANTHER TRANSCRIPTION FACTOR BHLH123-LIKE ISOFORM X1 9 448 - -
Gso11g3029 459 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 349 405 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3029 Gso-Chr11 46143744 46149771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3029 107 459 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 46.835 5.03e-82 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3029 - - gmx:100778697 885.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1834 12 42064717 42069289 Gso11g3029 11 46143744 46149771 GST
Gso15g0553 15 4897999 4901402 Gso11g3029 11 46143744 46149771 GST
Gso7g1597 7 37776671 37780730 Gso11g3029 11 46143744 46149771 PCT
Gso8g0515 8 4766590 4770431 Gso11g3029 11 46143744 46149771 PCT
Gso11g3029 11 46143744 46149771 Gso7g1597 7 37776671 37780730 PCT
Gso11g3029 11 46143744 46149771 Gso8g0515 8 4766590 4770431 PCT