Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3027 ATGAAGAACCATATTATGCCTTTTATGAGAATTATTTTCCTTTGTTATCACATACTTGTCTATCTTTCTGGAATTTCCTTGGCACTTGACTCAATTTCTCAAGACCTGTCCCTAAGTGATGATGGTAAAAACACCACCTTGGTTTCTAAAGATGGAACCTTTGAACTTGGATTTTTCACCCCAGGGAACTCCCAGAAACGTTACCTGGGAATTTGGTACAGGAAAATCCCTATTCAAACTGTGGTTTGGGTTGCAAACAGGCTCAATCCAATCAATGATTCATCTGGCATCTTGAGAATGAACCCAAGCACTGGGACCCTTGTCCTCACACATAATGGCACTGTTATTTGGTCTACAGCATCTATAAGAAGACCAGAGAGTCCAGTGGCACTTCTCTTAAATTCTGGCAATCTTGTGATAAGAGATGAGAAAGATGCAAACAGCGAGGACTATTTGTGGGAGAGCTTTAACTACCCTACTGATACTTTCTTACCTGAGATGAAGTTTGGTTGGGACTTGAGAACTGGTCTTAATAGGAAGCTAATAGCTTGGAAGAGTCCTGATGATCCATCTCCTAGTGACTTCTCTTTTGGTATGGTGCTCAATAACTACCCTGAAGCATACATGATGAAGGGTGATCAAAAGTTCTACCGAAGTGGACCATGGAATGGCTTGCATTCAAGTGGTTCACCACAAGTTAAGGCCAACCCCATTTATGACTTCAAGTTTGTTTCCAACAAGGATGAACTTTACTACACATACAGCCTTAAGAACTCGTCTATGATCTCAAGGTTGGTGCTAAATGCAACAAGCTACGTTCGTAAGCGGTATGTGTGGATTGAATCAAAGCAAAGATGGGAGGTGTACACTTCAGTGCCACTGGACTTATGTGACAGCTATTCCCTTTGTGGAGCTAATGCAAATTGTGTAATTTCAGATTCACCAGTGTGCCAATGTTTGCAAGGGTTCAAGCCTAAGTTACCTGAAGCATGGAGCTCAATGGATTGGTCTCATGGATGCATCCGCAATAAGGAATTAAGCTGTGAGAACAAGAACAAGGATGGATTTAACAAATTGACTTTGCTGAAAACGCCTGACACTACACATAGTTGGCTGGATCAGACCATTGGGTTAGAGGAATGCAAAGCCAAGTGCTTGGATAACTGTTCTTGTATGGCTTACGCGAATTCTGATATCAGTGGACAAGGAAGTGGCTGTGCTATGTGGTTTGGTGATCTAATTGATATTAGACAGTTCGCAGCTGGAGGCCAGGATGTATATGTTCGAATTGATGCTTCAGAATTAGAACACGCCAATGAGGGCCACAAGAAGGGTGGAGTCCTAGTGGCAGTAACAGTTACTTTGGCCTTGGCTGCAGTTGCTGGAATACTAATAATACTTGGTTGGTGTTATAGAAAGAAATCACGTTGCAGTGTCAAAGAGAGATCAGACTTCAGTATCAAATCAAATCAAAACAGTGGAATGCAAGTGGATGATATGGACCTACCAGTTTTTGACTTGTCAACAATAGCTAAGGCCACTAGCAACTTCACAGTCAAGAACAAAATTGGAGAAGGTGGTTTTGGACCTGTATACAGGGGAAGTCTAACAGATGGGCAAGAAATTGCTGTGAAGAGGCTTTCAGCAAGCTCAGGACAAGGATTGACCGAATTCAAGAACGAAGTAAAATTGATTGCAAAACTTCAACACCGCAATCTTGTAAAGCTTCTTGGATGTTGCCTTGAAGGAGAGGAAAAAATGTTGGTTTATGAGTACATGCTTAATGGTAGCTTGGACTCATTTATTTTTGATGAGCAAAGAAGTGGATCACTGGACTGGTCAAAGCGCTTCAACATTATATGTGGAATTGCCAAGGGCCTTCTCTATCTTCATCAGGATTCTAGACTAAGGATTATCCACAGAGATCTCAAAGCAAGTAATGTTTTACTTGACAGTGAGTTGAACCCCAAAATTTCTGATTTTGGCATGGCTAGAATTTTTGGTGTAGATCAGCAAGAAGGAAACACAAAGAGAATAGTTGGGACATACGGTTACATGGCACCAGAATATGCAACTGATGGGCTATTTTCAGTGAAATCTGATGTTTTCAGCTTTGGAGTTTTACTGCTGGAGATTATATCAGGAAAAAGAAGTAGAGGATATTACAATCAGAACCACAGCCAGAATCTCATTGGCCATGCATGGAAACTATGGAAAGAAGGAAGACCACTAGAACTGATAGATAAAAGCATAGAAGACTCGAGTTCTCTATCGCAAATGTTGCATTGCATTCATGTTAGTCTCTTGTGTGTTCAACAGAATCCAGAGGATAGGCCTGGAATGTCTAGTGTGCTCCTAATGTTAGTGAGTGAGCTTGAATTGCCTGAGCCAAAACAGCCAGGATTCTTTGGAAAATATTCAGGTGAAGCAGACTCCTCCACAAGTAAGCAGCAACTAAGTTCCACAAATGAAATAACCATTACCTTATTAGAAGCGCGTTGA 2502 0.4129 MKNHIMPFMRIIFLCYHILVYLSGISLALDSISQDLSLSDDGKNTTLVSKDGTFELGFFTPGNSQKRYLGIWYRKIPIQTVVWVANRLNPINDSSGILRMNPSTGTLVLTHNGTVIWSTASIRRPESPVALLLNSGNLVIRDEKDANSEDYLWESFNYPTDTFLPEMKFGWDLRTGLNRKLIAWKSPDDPSPSDFSFGMVLNNYPEAYMMKGDQKFYRSGPWNGLHSSGSPQVKANPIYDFKFVSNKDELYYTYSLKNSSMISRLVLNATSYVRKRYVWIESKQRWEVYTSVPLDLCDSYSLCGANANCVISDSPVCQCLQGFKPKLPEAWSSMDWSHGCIRNKELSCENKNKDGFNKLTLLKTPDTTHSWLDQTIGLEECKAKCLDNCSCMAYANSDISGQGSGCAMWFGDLIDIRQFAAGGQDVYVRIDASELEHANEGHKKGGVLVAVTVTLALAAVAGILIILGWCYRKKSRCSVKERSDFSIKSNQNSGMQVDDMDLPVFDLSTIAKATSNFTVKNKIGEGGFGPVYRGSLTDGQEIAVKRLSASSGQGLTEFKNEVKLIAKLQHRNLVKLLGCCLEGEEKMLVYEYMLNGSLDSFIFDEQRSGSLDWSKRFNIICGIAKGLLYLHQDSRLRIIHRDLKASNVLLDSELNPKISDFGMARIFGVDQQEGNTKRIVGTYGYMAPEYATDGLFSVKSDVFSFGVLLLEIISGKRSRGYYNQNHSQNLIGHAWKLWKEGRPLELIDKSIEDSSSLSQMLHCIHVSLLCVQQNPEDRPGMSSVLLMLVSELELPEPKQPGFFGKYSGEADSSTSKQQLSSTNEITITLLEAR* 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3027 833 ProSiteProfiles EGF-like domain profile. 293 329 IPR000742 -
Gso11g3027 833 PANTHER - 36 830 - -
Gso11g3027 833 PIRSF SRK 1 833 IPR024171 GO:0004674
Gso11g3027 833 Gene3D - 28 157 IPR036426 -
Gso11g3027 833 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672|GO:0006468
Gso11g3027 833 Pfam D-mannose binding lectin 80 185 IPR001480 -
Gso11g3027 833 Pfam Domain of unknown function (DUF3403) 791 833 IPR021820 GO:0004674
Gso11g3027 833 CDD PAN_AP_plant 346 430 - -
Gso11g3027 833 ProSiteProfiles Protein kinase domain profile. 517 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3027 833 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 190 IPR036426 -
Gso11g3027 833 CDD STKc_IRAK 523 788 - -
Gso11g3027 833 Pfam PAN-like domain 348 416 IPR003609 -
Gso11g3027 833 SMART blect_4 38 159 IPR001480 -
Gso11g3027 833 SUPERFAMILY Protein kinase-like (PK-like) 497 788 IPR011009 -
Gso11g3027 833 SMART ntp_6 351 430 IPR003609 -
Gso11g3027 833 Gene3D Transferase(Phosphotransferase) domain 1 593 796 - -
Gso11g3027 833 Pfam S-locus glycoprotein domain 217 326 IPR000858 GO:0048544
Gso11g3027 833 ProSiteProfiles Bulb-type lectin domain profile. 29 153 IPR001480 -
Gso11g3027 833 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 36 830 - -
Gso11g3027 833 CDD B_lectin 42 159 IPR001480 -
Gso11g3027 833 ProSiteProfiles PAN/Apple domain profile. 348 432 IPR003609 -
Gso11g3027 833 Gene3D Phosphorylase Kinase; domain 1 474 592 - -
Gso11g3027 833 SMART serkin_6 517 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3027 833 Pfam Protein tyrosine and serine/threonine kinase 518 785 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3027 Gso-Chr11 46125311 46129622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3027 445 805 Receptor kinase-like Gene Family AT4G23190 52.589 5.43e-131 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso11g3027 PK_Tyr_Ser-Thr 4.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3027 - - gmx:100778155 1637.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g3027 11 46125311 46129622 Gso12g1162 12 17386684 17402027 PCT
Gso11g3027 11 46125311 46129622 Gso6g2189 6 41941091 41945086 PCT
Gso12g1162 12 17386684 17402027 Gso11g3027 11 46125311 46129622 PCT
Gso6g2189 6 41941091 41945086 Gso11g3027 11 46125311 46129622 PCT