Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3026 ATGAGACAAGCTGGTGCATATTCAGGGTTACTGTGTGGTGGGGTATCAGGAAGGACAGGGCCCCACTCACTGCCCTTGGCAAGGATCAAGAAGATCATGAAGAATTCTGGGGAGGATGTTAAGATGATATCAGGTGAGGCTCCAATTATTTTCTCCAAGGCTTGTGAGCTCTTCATTGAGGAACTTACTAGAAGGTCCTGGATCATGGCCATCCAAGGCAAAAGGAGGACTTTGCACAAAGAGGACTTGGCTTCTGCTGTTATAGCCACTGATATATTTGATTTTTTGATCACTTTGGTTTCCAGTTCTGAAAGCCATGCAGTTGGTGGTGCCACAAATGTCATGGAGGTGGAAACTATAGATTGCTCTTAA 372 0.4516 MRQAGAYSGLLCGGVSGRTGPHSLPLARIKKIMKNSGEDVKMISGEAPIIFSKACELFIEELTRRSWIMAIQGKRRTLHKEDLASAVIATDIFDFLITLVSSSESHAVGGATNVMEVETIDCS* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3026 123 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Gso11g3026 123 PANTHER HAP5 SUBUNIT OF HAP COMPLEX 1 107 - -
Gso11g3026 123 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 107 - -
Gso11g3026 123 Gene3D Histone, subunit A 15 101 IPR009072 GO:0046982
Gso11g3026 123 SUPERFAMILY Histone-fold 17 96 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3026 Gso-Chr11 46121758 46122409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3026 22 104 CCAAT-HAP5 Transcription Factor Family AT3G48590 66.265 1.12e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gso11g3026 CBFD_NFYB_HMF 1.5e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3026 - - gmx:100777614 243.047