Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3020 ATGGAAGGTTTTACCTTGCTTCTGTTCTGCCTTGCCTTGCTGAATAGTATAGCAGCTGCCACTGTGAGAGAAACTATTAGCACATTGCAATCAATCAATGATGACCAGATCATAGTTTCACCTGGCAAAACCTATGCACTTGGATTCTTCAGTCCAGGCAATTCGAAGAACCGTTACGTGGGAATTTGGTATAATGAGATCCCAACACAGACTGTAGTATGGGTTGCCAACAGAGACAACCCTCTTGCAGACTCATCAGGGGTTTTGAAGCTCAATGAAACTGGAGCTCTAGTCCTTCTCAACCATAACAAGAGCGTTGTCTGGTCTTCCAACGCATCGAAGCCAGCGCGGTATCCGGTTGCGAAGCTTTTGGATTCTGGAAATCTCGTTGTGCAGGACGGAAACGACACCAGTGAAACAAAAGATTTATTGTGGCAAAGTTTTGATTATCCGGGGGACACGATCTTGCCGGGACAGAAGTTTGGAAGAAATCTAGTTACGGGCCTGAATCGATTCATGTCATCATGGAACAGCACTGATGATCCATCACAAGGGGAATATAGTTATCAAATTGATATTAGCGGATATCCGCAGCTCGTTTTAAGAGAAGGCGCTTTCAAAAGATATCGTTTTGGATCGTGGAATGGTATTCAGTTTAGTGGGGCACCTCAGCTGAAGCAAAATAATTTTACTAGATTTAGTTTTGTTTCTGATGAGGAAGAGTTGTATTTTAGATTTGAGCAGACCAACAAGTTCGTTTTTCATAGGATGCAGTTATCAACAGATGGATATATCCTGGGGGATTATTGGAATACTGAAGAAAAAGTTTGGAGCTTGCATGGGAAAATTCCTGTGGATGACTGTGATTACTATGACAAATGTGGAGCCTATGCTAGCTGTAATATAAACAATGTCCCTCCGTGTAATTGCTTGGACGGATTCGTACCCAAAACGGATGATATATACGGTGGTTGTGTCAGGAGAACTTCACTTAGTTGTCATGGAGACGGGTTTTTGAAGCTTTCAGGGTTGAAACTACCAGACACAGAGAGATCCTGGTTTAATAGAAGTATTAGCCTTGAGGATTGCAGGACATTGTGCATGAACAATTGCTCCTGTACAGCTTATGCAGCCTTGGATGTCAGTAAAGGGCCAACTGGGTGTTTACTCTGGTTTGATGATCTGGTTGACATAAGAGATTTCACTGATGTTGATGAAGATATATATATAAGGGTGGCTGGGACAGAAATAGAAGCTATTGAAGGAAAGCAATTACATAAATCCAACATCCGGAAGCCACAGACTGTTTTCATAAGTTGTGTGTTGTTTATTGCAATTTTAATCTTATGCTTAACCTTCATCATTTATAGACGGTGGAAGACACGGCAGAAAGGAGGAAAGATGAAAGACAAACTAGAAAGGGATGCAAGTGTAATATATGAGCACGAGAAGGATGACCTAGAGTTACCCATGTTTGAATGGTCTACAATTACTTGTGCAACCAATAACTTTTCACCTGACAACAAACTAGGGGAAGGTGGTTTTGGATCAGTTTATAAGGGTATCCTGGACGATGGAGGAGAAATAGCTGTCAAGAGGCTCTCAAAGAATTCGAGCCAAGGACTACAAGAGTTCAAAAATGAAGTTATGCATATTGCAAAGCTTCAGCACAGGAATTTAGTGAGGCTACTAGGGTATTGCATTCAAGCAGAAGAAAGACTGCTTGTTTATGAATTTATGGCCAACAAAAGCTTGGATTCCTTCATATTTGATGAAAACAAGAGCATGTTACTAGATTGGCCAAGGCGGTCGCTAATTATCAATGGGGTTGCTCGGGGTCTTCTTTATCTTCATCAAGATTCAAGGCATAGAATAGTTCACAGAGATCTCAAAGCCGGGAATGTTTTGTTAGATAGTGAAATGAACCCAAAGATCTCGGACTTTGGACTGGCTAGAAGCTTTGGAGGAAACGAAATCGAAGCAACTACAAAGCATGTAGTTGGAACCTATGGCTATCTGCCTCCAGAGTATATAATTGATGGAGCTTATTCAACAAAGTCAGATGTTTTCAGCTTCGGCGTGTTGATATTGGAGATAGTGAGTGGGAAGAGAAATAAAGGGTTCTGTCATCAAGATAATCTTCTGGCACATGTATGGAGGCTATTTACTGAAGGCAAATGCTCTGAAATAGTTGATGCAACAATAATAGACTCACTCAATTTACCTGAAGTGCTAAGAACAATTCACGTGGGACTACTGTGTGTGCAACTAAGTCCAGACGACAGGCCGAACATGTCATCTGTGGTTCTGATGCTGAGCAGTGAATCTGAACTGCCTCAGCCAAACTTGCCTGGATTCTTTACAAGTACAAGTATGGCTGGCGATAGTTCTTCATCAAGCAGTTATAAACAATACACAAATAATGACATGACAGTAAGCATAATGTCTGCTAGATAG 2457 0.4135 MEGFTLLLFCLALLNSIAAATVRETISTLQSINDDQIIVSPGKTYALGFFSPGNSKNRYVGIWYNEIPTQTVVWVANRDNPLADSSGVLKLNETGALVLLNHNKSVVWSSNASKPARYPVAKLLDSGNLVVQDGNDTSETKDLLWQSFDYPGDTILPGQKFGRNLVTGLNRFMSSWNSTDDPSQGEYSYQIDISGYPQLVLREGAFKRYRFGSWNGIQFSGAPQLKQNNFTRFSFVSDEEELYFRFEQTNKFVFHRMQLSTDGYILGDYWNTEEKVWSLHGKIPVDDCDYYDKCGAYASCNINNVPPCNCLDGFVPKTDDIYGGCVRRTSLSCHGDGFLKLSGLKLPDTERSWFNRSISLEDCRTLCMNNCSCTAYAALDVSKGPTGCLLWFDDLVDIRDFTDVDEDIYIRVAGTEIEAIEGKQLHKSNIRKPQTVFISCVLFIAILILCLTFIIYRRWKTRQKGGKMKDKLERDASVIYEHEKDDLELPMFEWSTITCATNNFSPDNKLGEGGFGSVYKGILDDGGEIAVKRLSKNSSQGLQEFKNEVMHIAKLQHRNLVRLLGYCIQAEERLLVYEFMANKSLDSFIFDENKSMLLDWPRRSLIINGVARGLLYLHQDSRHRIVHRDLKAGNVLLDSEMNPKISDFGLARSFGGNEIEATTKHVVGTYGYLPPEYIIDGAYSTKSDVFSFGVLILEIVSGKRNKGFCHQDNLLAHVWRLFTEGKCSEIVDATIIDSLNLPEVLRTIHVGLLCVQLSPDDRPNMSSVVLMLSSESELPQPNLPGFFTSTSMAGDSSSSSSYKQYTNNDMTVSIMSAR* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3020 818 SMART serkin_6 504 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3020 818 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 11 814 - -
Gso11g3020 818 PIRSF SRK 2 818 IPR024171 GO:0004674
Gso11g3020 818 Pfam D-mannose binding lectin 71 176 IPR001480 -
Gso11g3020 818 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
Gso11g3020 818 Pfam Domain of unknown function (DUF3403) 773 818 IPR021820 GO:0004674
Gso11g3020 818 Gene3D - 18 148 IPR036426 -
Gso11g3020 818 Gene3D Transferase(Phosphotransferase) domain 1 580 781 - -
Gso11g3020 818 SUPERFAMILY Protein kinase-like (PK-like) 488 796 IPR011009 -
Gso11g3020 818 CDD PAN_AP_plant 329 413 - -
Gso11g3020 818 Pfam Protein tyrosine and serine/threonine kinase 507 769 IPR001245 GO:0004672|GO:0006468
Gso11g3020 818 SMART ntp_6 333 412 IPR003609 -
Gso11g3020 818 ProSiteProfiles PAN/Apple domain profile. 333 413 IPR003609 -
Gso11g3020 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Gso11g3020 818 CDD STKc_IRAK 510 772 - -
Gso11g3020 818 CDD B_lectin 30 151 IPR001480 -
Gso11g3020 818 Pfam S-locus glycoprotein domain 209 317 IPR000858 GO:0048544
Gso11g3020 818 Gene3D Hepatocyte Growth Factor 331 409 - -
Gso11g3020 818 SMART blect_4 29 151 IPR001480 -
Gso11g3020 818 Gene3D Phosphorylase Kinase; domain 1 478 579 - -
Gso11g3020 818 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 182 IPR036426 -
Gso11g3020 818 Pfam PAN-like domain 333 398 IPR003609 -
Gso11g3020 818 ProSiteProfiles Protein kinase domain profile. 504 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3020 818 PANTHER - 11 814 - -
Gso11g3020 818 ProSitePatterns Protein kinases ATP-binding region signature. 510 532 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3020 Gso-Chr11 46087617 46092673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3020 436 806 Receptor kinase-like Gene Family AT4G23190 51.187 8.49e-120 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso11g3020 PK_Tyr_Ser-Thr 5.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3020 - - gmx:100795006 1642.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g3020 11 46087617 46092673 Gso6g2151 6 41169738 41173151 PCT