Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3011 ATGGCAAAGTCTTCTACTGAAAAGAATGGACTGAAGAAGGGTCCATGGACTCCAGAGGAAGATCAGAAACTCATCGATTACATTCAGAAACATGGACATGGGAAGTGGAGAACCCTTCCCAAAAATGCAGGACTAAAAAGATGTGGAAAGAGTTGTCGGCTTCGCTGGGCTAACTACTTGAGGCCCGATATAAAGAGAGGGAGATTCTCATTCGAAGAAGAAGAAGCCATCATTCAGTTACACAGTGTTTTGGGAAACAAGTGGTCTACAATTGCTGCTAACTTGCCAGGAAGAACAGATAATGAGATCAAGAATTATTGGAACACTCACATCAAGAAAAAGCTATTGAAGATGGGGATTGATCCAGTGACTCACACACCTCGCCTTGATGTTATTCAACTTGCCTCCATTCTCAACACATCTTTATACAATTCAGCACCCCAATTCAACTACCCTTCTCTTTCTGGAATTGGAAGATCAGTGATAAACCCAAGCCATATGCTAGGTTTGCTCACTACCCTGCTATCATGTCAAAACAGAAATTACAACCCTGATGTATTGAATAATAACCAACTTAGTGGTGGTAGCACTCTACTGCAAAATCAACACCAATGTTCCCGAATGCAACTTGATTCTACACAAGCCTTCCAACCAAACCAACCACAAGTCTCACTACAAGAAAACCACATTGCTAAGTCTAATTCTAATCCATTGAATATGGAACCCCAAGTTATGAAAACTACATTAGAGAATCAAATCACTCCAATTGCTACCCCTTTTAGCCAACAAAACACACTACCAAATTTGTGGCACTATAATACTGAAGGTCACATATCTGATCTACCAACAATGGCTCAATCATCATCAGCTATGCAATGTTTCTCTTCTCCCAAGTTCAATTCTATATACAACAATCTCTTGGAAAATCAGAATTTGTGTAACAACAACGAGGGGATGCCAAATTTCAATCTAAGTTCACTGTTATCGTCCACACCCTCATCTTCTAGCCCAATTAGTACTTTGAATTCGTCATCTTCCACAACATTTGTCAACGGAACCACTGAAGATGAAAGGGACACTTACGGCAGCAGCATGTTGATGTATAACATTTCAAATGGCTTGAATGACTCTGGACTTTTGTGA 1143 0.4016 MAKSSTEKNGLKKGPWTPEEDQKLIDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANYLRPDIKRGRFSFEEEEAIIQLHSVLGNKWSTIAANLPGRTDNEIKNYWNTHIKKKLLKMGIDPVTHTPRLDVIQLASILNTSLYNSAPQFNYPSLSGIGRSVINPSHMLGLLTTLLSCQNRNYNPDVLNNNQLSGGSTLLQNQHQCSRMQLDSTQAFQPNQPQVSLQENHIAKSNSNPLNMEPQVMKTTLENQITPIATPFSQQNTLPNLWHYNTEGHISDLPTMAQSSSAMQCFSSPKFNSIYNNLLENQNLCNNNEGMPNFNLSSLLSSTPSSSSPISTLNSSSSTTFVNGTTEDERDTYGSSMLMYNISNGLNDSGLL* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3011 380 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Gso11g3011 380 Gene3D - 10 66 - -
Gso11g3011 380 SMART sant 12 62 IPR001005 -
Gso11g3011 380 SMART sant 65 113 IPR001005 -
Gso11g3011 380 CDD SANT 68 111 IPR001005 -
Gso11g3011 380 PANTHER TRANSCRIPTION FACTOR MYB30-LIKE 1 369 - -
Gso11g3011 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Gso11g3011 380 MobiDBLite consensus disorder prediction 333 356 - -
Gso11g3011 380 CDD SANT 15 60 IPR001005 -
Gso11g3011 380 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Gso11g3011 380 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Gso11g3011 380 Gene3D - 68 115 - -
Gso11g3011 380 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 369 - -
Gso11g3011 380 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Gso11g3011 380 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Gso11g3011 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3011 Gso-Chr11 45952272 45954640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3011 1 380 MYB Transcription Factor Family AT4G21440 44.271 9.04e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso11g3011 Myb_DNA-binding 2.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3011 K09422 - gmx:100820398 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0575 15 5087624 5089570 Gso11g3011 11 45952272 45954640 GST
Gso7g1610 7 37897465 37899237 Gso11g3011 11 45952272 45954640 PCT
Gso8g0503 8 4653094 4654856 Gso11g3011 11 45952272 45954640 PCT
Gso11g3011 11 45952272 45954640 Gso7g1610 7 37897465 37899237 PCT
Gso11g3011 11 45952272 45954640 Gso8g0503 8 4653094 4654856 PCT