Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3005 ATGAACAGCAAGGCCAACGTTTCCAAAGAGCTCAACGCCAAGCACAAGAAGATACTGGAAGGACTTCTTAAATTACCAGAGAATAGGGAATGTGCTGACTGCAAAGCTAAAGGTCCAAGATGGGCTAGTGTAAATCTTGGCATCTTTATATGCATGCAGTGTTCAGGAATACATCGAAGTTTGGGGGTACATATATCAAAGGTTCGTTCTGCAACCCTGGACACTTGGCTTCCAGAGCAAGTTGCATTCATTCAATCAATGGGAAACGAGAAAGCAAATTGTTTCTGGGAAGCAGAATTACCTCCAAATTATGATAGAGTTGGAATTGAGAATTTCATTCGTGCAAAGTATGATGAAAAGAGATGGGTTCCAAGAGATGGGAATTCAAAAACACCTTCTGGATTTCGGGAAGAGAAAAGTCCTTCACATTGGCAGAGGCCTGTGGAGAGAAGTGGTTATGCCGCTGTTTCTGAAAATAAATTTGAGGAAAGGAAGAAAATCCAACCATCAACTGCAATTCCTGCCGCAAGAATTAATGTTCCTGCTCCTCCCAGAGCACCTGAGCAGGTAACTCCTATTACCAAACCTCAGCATGTGGAGAAAGTGGAATCAGTAGCACCACAACCACAAGCTCCCCAACCACTAGCTGAAACATCAAAGCAGGCTACAGACACAGTTAAAAATAACCCTCCTAAAGTTGACTATGCCACAGACCTTTTCAACATGTTGTCTATGGATGGCCCCAATGAAAATGGCTCTGAGGCAGCTGGTACAACTACTGATGATAATCACTGGGCAGGTTTCCAGTCTGCTGCAGAGGTGTCAACAGCTGAGAAGACTAGTCCCCTGAAAGCAGCTGATAGTACTCCAGCTTCTGCATCTGGAATTGAGGATCTTTTCAAAGATTTACATCCTGTGACACCAAGTTTGACTCCAGAAAAACCACAGAAAGATGTGAAAAATGATATCATGAGCCTCTTTGAGAAGGGCAATATGGTGTCTCCATTTTCTATGCATCAACAGCAGCTTGCCATGCTAGCACAGCAACAGTCTCTTCTAATGGCTTCTGCAGCTAAATCTTCTGGTGGGGATCCTAGGTATCCTGCTAGCATACAACAACCTAGACCCAATGTTCCTATCCAAAGTTGGCCAGCTACTGGCTATTCGATTCCTGGAGTAATGCCCATGGGTGGTCAGGGAGAGTTGCAAAAACTTGTGCAGGGTCAGACTAGGAACATGACCCCAGCACATTTTGCAGGGAGTTCTGTTCAATATCCACCATCCAGTTTCTATGGTATGGGACAAGTTCCTCCTCCAGTTAACGGTATGACAATGGGAGTGAGTAAACCTCAGTCAGGAGCTCCTGCAGTGTCATCTACCACTTCACAGTCTGCGAAGGATTATGATTTTTCCTCCTTAACACAGGGAATGTTTATGAAACAGTGA 1446 0.444 MNSKANVSKELNAKHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANCFWEAELPPNYDRVGIENFIRAKYDEKRWVPRDGNSKTPSGFREEKSPSHWQRPVERSGYAAVSENKFEERKKIQPSTAIPAARINVPAPPRAPEQVTPITKPQHVEKVESVAPQPQAPQPLAETSKQATDTVKNNPPKVDYATDLFNMLSMDGPNENGSEAAGTTTDDNHWAGFQSAAEVSTAEKTSPLKAADSTPASASGIEDLFKDLHPVTPSLTPEKPQKDVKNDIMSLFEKGNMVSPFSMHQQQLAMLAQQQSLLMASAAKSSGGDPRYPASIQQPRPNVPIQSWPATGYSIPGVMPMGGQGELQKLVQGQTRNMTPAHFAGSSVQYPPSSFYGMGQVPPPVNGMTMGVSKPQSGAPAVSSTTSQSAKDYDFSSLTQGMFMKQ* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3005 481 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Gso11g3005 481 MobiDBLite consensus disorder prediction 124 150 - -
Gso11g3005 481 CDD ArfGap 19 117 - -
Gso11g3005 481 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 481 IPR044520 GO:0005096
Gso11g3005 481 MobiDBLite consensus disorder prediction 124 145 - -
Gso11g3005 481 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Gso11g3005 481 MobiDBLite consensus disorder prediction 211 230 - -
Gso11g3005 481 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Gso11g3005 481 MobiDBLite consensus disorder prediction 358 378 - -
Gso11g3005 481 PANTHER ARF GTPASE ACTIVATOR 1 481 - -
Gso11g3005 481 MobiDBLite consensus disorder prediction 198 230 - -
Gso11g3005 481 Pfam Putative GTPase activating protein for Arf 17 123 IPR001164 GO:0005096
Gso11g3005 481 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Gso11g3005 481 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Gso11g3005 481 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Gso11g3005 481 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3005 Gso-Chr11 45891533 45896419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3005 16 123 C2H2 Transcription Factor Family AT4G05330 47.414 9.21e-29 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3005 K12486 - gmx:100789910 942.569