Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2994 ATGGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTGGTTCGCTTTAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCCGGCGATTTAGTTCTTGCTACAGCATATTCACATGAGCTGCCACGATATGGTCTTGAAGTAGGACTTACAAATTATGCAGCAGCTTATTGCACTGGTCTCCTGTTGGCCCGAAGAGTCCTCAAAACACTTGAAATGGATGAGGAGTACGAAGGAAATGTTGAGGCTACTGGAGAGGATTATTCAGTGGAACCTGCCGAGAGCAGGAGGCCATTCCGTGCACTCCTTGATGTTGGTCTTGTTAGGACTACAACAGGAAATCGCGTCTTTGGTGCCCTTAAGGGAGCTCTGGATGGGGGTTTGGATATTCCTCACAGCGACAAGAGGTTTGCTGGGTTTGATAAGGAGAAGAAGGAGCTTGATGCCGAGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATACATCAAGCGTGGGATAGAGGCTGATGGTATTGAGGCACTTTACAAGAAGGTTCATGCTGCCATCCGTGCTGATCCTACTCTGAGGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGCACGTGTGGCGGCTATCAACTCTGCTGCTGATAGTGATGAAGATGATGAGTGA 897 0.456 MVYVKAQKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFSNKDIVAQIISASIAGDLVLATAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKTLEMDEEYEGNVEATGEDYSVEPAESRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKELDAEVHRKYVFGGHVAAYMKILAEDEPEKYQSHFSEYIKRGIEADGIEALYKKVHAAIRADPTLRKSDKQPPKEHKRYNMKKLTYEERKAKLIARVAAINSAADSDEDDE* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2994 298 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 14 175 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gso11g2994 298 Pfam Ribosomal L18 C-terminal region 235 288 IPR025607 -
Gso11g2994 298 MobiDBLite consensus disorder prediction 250 269 - -
Gso11g2994 298 PANTHER PROTEIN L5, PUTATIVE-RELATED 1 297 - -
Gso11g2994 298 Hamap 50S ribosomal protein L18 [rplR]. 14 246 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gso11g2994 298 PRINTS Ribosomal protein L5 signature 20 39 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gso11g2994 298 PRINTS Ribosomal protein L5 signature 43 62 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gso11g2994 298 PRINTS Ribosomal protein L5 signature 84 104 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gso11g2994 298 PRINTS Ribosomal protein L5 signature 144 163 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gso11g2994 298 PRINTS Ribosomal protein L5 signature 164 183 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gso11g2994 298 PRINTS Ribosomal protein L5 signature 206 226 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gso11g2994 298 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 297 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Gso11g2994 298 CDD Ribosomal_L18_L5e 41 170 - -
Gso11g2994 298 Gene3D - 1 291 - -
Gso11g2994 298 SUPERFAMILY Translational machinery components 11 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2994 Gso-Chr11 45789175 45791985 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2994 1 291 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 81.100 0.0 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2994 K02932 - gmx:100785668 584.334