Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2987 ATGAGCAAAGCCCTGGGAGGAACAACAGAAGACGAAGACGAAGAAGAACAACAACTACTAGAACAAGACCAAGATTGTTTCTACGACTCACACGACCGTTTACTCTCTCTCTCTTCTTCATGCTCCTGCTCCAACTCCAACTCCGACAACGAAAACGACGCCGAAGAACACCAAAACGACACCCTCCCCAATTTCACCAACTACGACATATGGATCTCCCAACCCTCCTCCGTTTCAGAACGCCGCACGCGCCTTTTACTTTCTCTTGGACTCTCTTCCCTCACGCGCCCAATCCCTCGCGATCGCGCGTCCCCTCTCCGTTTCATATCCGACACCACCACCACAAACCCTAACAAGCCACCAAATCCTAAACCCCCCCCACCGCCTCCGCCGCCGCCACCACCACCACCACCACCACCACCATCACCACCAATAGAAGAGCTCTGCACGATTCGAGATCTCGATAACGGGAAAGAGTTCGTCGTGAACGAATTGGAGAATCTGCGCGAGGTTGCTACGGGGCGGCAATTGACGATGGAAGAATTCGAAATGACGGTGGGGCATTCCCCCATCGTTCAGGAACTGATGCGGCGGCAGAATGTTGAAGAGGCGAACGTTGATTCCAATGCGGGTGGTTCCAAAGCGAAGAAGAAGGGGACCGGGTGGTTGAAGAGTATCAAGAGTGTAGCGAGTTCGGTGGCGGGGTATAGGGATCGCCGGAGTAGCGACGAGAGGGACACGTCGTCGGAGAAGGGCGGGAGGCGGTCGAGCTCCGCCACCGACGACAGCCAGGAGGGCAGTGGTGGCGCGTTTCACGGGTCGGAGAGGGTGAGAGTGAAGCAATATGGGAAGAGTTGTAAGGAGGTGACTGCTTTGTATAAGAGTCAGGAGATTCGGGGGCATAGTGGGAGCATTTGGAGCATTAAGTTTAGTTTGGATGGGAAGTATTTGGCGAGTGCCGGGGAGGATTGTGTGATTCATGTGTGGCAGGTGGTGGAGGGGGAGAGGAAGGGGGAGTTGTTGTTGTTGGATAGGGAGAAGGGTGAAGATGGGAATGTGAATATGTTTTTGGTGGTGAATGGGTCGCCGGAGCCAATGGCGGGGGCGGCGGGGTTGCTGTCGCCGCTGGGGGATGGGGAGAGGAAAAGGAAGGGGAGGTCGAGTGTGAGTAGGAAGTCCTTGAGCTTGGACCAGTTTGTGGTGCCACAGACCGTGTTTGCGCTTACTGACAAACCAGTTTGCTCCTTCCTGGGACATCTCCATGATGTGCTTGACCTCTCATGGTCTAAAACTCAGCACTTGCTCTCATCTTCAATGGACAAAACTGTGCGGCTGTGGCATCTATCCAGCAAGTCTTGTTTGAAAATATTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGTGGATCTCTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATCGACAAGTTGTTGATTGGACCGATCTACATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGTCAGGGTGCACTGGTTGGTTCATACAAGGGTAGCTGCCATTTATATAATACATCTGAAAATAAGTTGCAACAGAAAAGTAAGATCAATCTGCAGAACAAGAAAAAGAAATCACATCACAAGAAAATTACTGGTTTCCAGTTTGCCCCAGGAAGTTCATCAGAAGTACTTATCACATCTGCTGACTCACGAATTCGGGTGGTTGATGGGGTTGATCTAGTTCATAAGTTTAAAGGCTTTCGGAATGCCACTAGCCCAATTTCAGCATCCCTCACGGCAAATGGTAAATATGTTGTCGCGGCTAGTGAGGACTCCCATGTATACATCTGGAAAAACGAAGCTGATTGCAGGCCTAACAGAACTAAAGGTGTCACTGTCACACGATCATATGAACATTTTCACTGTAAAGATGTGTCAGTGGCCATTCCCTGGCCTGGTGTGGGTGATGCATGGGACATGCATGATACGCTATCCGGAGAACAACCCGAGCTTGATAACCATGCTGATGAAGTCGCATCAGCCAACCATCCTCCTACCCCTGTAGAGGAGAACTTTGTTACTGAGGGTTCAAGATCTGCATCAGGTTACAGCAACAGTCCACGCCATGCAACCATTGCAAGTGCAACAAATACTTACTTTTTTGATAGAATTTCTGCAACATGGCCAGAGGAAAAACTTCTTCTGGCTACTAGAAACCAAAGCCCTCGTGTCAGCATGGATTTCTCTAACGGGGTAAGTCAAAAAATGTCAGCCTGGGGTATGGTGATCGTAACTGCCGGCCTCCGAGGGGAAATAAGAACTTTCCAAAATTTTGGATTACCACTTCGGATATAG 2373 0.4985 MSKALGGTTEDEDEEEQQLLEQDQDCFYDSHDRLLSLSSSCSCSNSNSDNENDAEEHQNDTLPNFTNYDIWISQPSSVSERRTRLLLSLGLSSLTRPIPRDRASPLRFISDTTTTNPNKPPNPKPPPPPPPPPPPPPPPPPSPPIEELCTIRDLDNGKEFVVNELENLREVATGRQLTMEEFEMTVGHSPIVQELMRRQNVEEANVDSNAGGSKAKKKGTGWLKSIKSVASSVAGYRDRRSSDERDTSSEKGGRRSSSATDDSQEGSGGAFHGSERVRVKQYGKSCKEVTALYKSQEIRGHSGSIWSIKFSLDGKYLASAGEDCVIHVWQVVEGERKGELLLLDREKGEDGNVNMFLVVNGSPEPMAGAAGLLSPLGDGERKRKGRSSVSRKSLSLDQFVVPQTVFALTDKPVCSFLGHLHDVLDLSWSKTQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWTDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSKINLQNKKKKSHHKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVHKFKGFRNATSPISASLTANGKYVVAASEDSHVYIWKNEADCRPNRTKGVTVTRSYEHFHCKDVSVAIPWPGVGDAWDMHDTLSGEQPELDNHADEVASANHPPTPVEENFVTEGSRSASGYSNSPRHATIASATNTYFFDRISATWPEEKLLLATRNQSPRVSMDFSNGVSQKMSAWGMVIVTAGLRGEIRTFQNFGLPLRI* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2987 790 MobiDBLite consensus disorder prediction 237 258 - -
Gso11g2987 790 ProSiteProfiles Trp-Asp (WD) repeats profile. 456 490 IPR001680 GO:0005515
Gso11g2987 790 MobiDBLite consensus disorder prediction 1 25 - -
Gso11g2987 790 Gene3D - 216 356 IPR015943 GO:0005515
Gso11g2987 790 Gene3D - 393 647 IPR015943 GO:0005515
Gso11g2987 790 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 456 490 - -
Gso11g2987 790 ProSiteProfiles Trp-Asp (WD) repeats profile. 298 339 IPR001680 GO:0005515
Gso11g2987 790 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 416 450 - -
Gso11g2987 790 MobiDBLite consensus disorder prediction 95 146 - -
Gso11g2987 790 PANTHER WD REPEAT DOMAIN 44 21 95 IPR040324 -
Gso11g2987 790 PANTHER WD REPEAT DOMAIN 44 148 790 IPR040324 -
Gso11g2987 790 SMART WD40_4 583 624 IPR001680 GO:0005515
Gso11g2987 790 SMART WD40_4 291 330 IPR001680 GO:0005515
Gso11g2987 790 SMART WD40_4 537 582 IPR001680 GO:0005515
Gso11g2987 790 SMART WD40_4 492 530 IPR001680 GO:0005515
Gso11g2987 790 SMART WD40_4 450 489 IPR001680 GO:0005515
Gso11g2987 790 SMART WD40_4 409 447 IPR001680 GO:0005515
Gso11g2987 790 MobiDBLite consensus disorder prediction 118 146 - -
Gso11g2987 790 Pfam WD domain, G-beta repeat 411 446 IPR001680 GO:0005515
Gso11g2987 790 Pfam WD domain, G-beta repeat 296 329 IPR001680 GO:0005515
Gso11g2987 790 Pfam WD domain, G-beta repeat 587 624 IPR001680 GO:0005515
Gso11g2987 790 Pfam WD domain, G-beta repeat 452 489 IPR001680 GO:0005515
Gso11g2987 790 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 298 331 - -
Gso11g2987 790 PRINTS G protein beta WD-40 repeat signature 317 331 IPR020472 -
Gso11g2987 790 PRINTS G protein beta WD-40 repeat signature 434 448 IPR020472 -
Gso11g2987 790 PRINTS G protein beta WD-40 repeat signature 476 490 IPR020472 -
Gso11g2987 790 MobiDBLite consensus disorder prediction 38 62 - -
Gso11g2987 790 MobiDBLite consensus disorder prediction 233 274 - -
Gso11g2987 790 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 148 790 - -
Gso11g2987 790 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 21 95 - -
Gso11g2987 790 ProSiteProfiles Trp-Asp (WD) repeats profile. 416 456 IPR001680 GO:0005515
Gso11g2987 790 SUPERFAMILY WD40 repeat-like 293 626 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2987 Gso-Chr11 45673374 45679034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2987 404 621 U-box Gene Family AT1G04510 26.891 1.82e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2987 K20241 - gmx:100815065 1386.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1876 12 42591501 42597516 Gso11g2987 11 45673374 45679034 GST