Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2970 ATGGCCGAGTTCACAGAATTGTTTCCATTGGGCGAACAATTTGATGGTTTGATGCACGTGTATGTGTATGTCATCACATTTGATCTTCCAACTCTATTCATTGTTCTATTCATACTCACAGCGTTGTTCTTCATCTTGTATCGAATTCTCAACGGTTTGTTCTTCTGGTTATTGGAAATGAGGCCAATTGAACATGATATTGAAGAGGGTAATACTAATACCCATTTAGCCAATTATGGGGAAACTGAGCCATCTCACCATTTTACAATATTTCATGCCCTTGTGCATCCTTGGGCATTGGTGGCTGCATTTGAAGGAGCTTTTAATGAGAAAAGAGGACAAAGACTTAGAGCTTCCAAGAAATTGCCCCCTTTGGTGAATTATGGAAAGCATGGTGTCACAAGAAGTTGTGGTGAGGAATGTGCCATTTGCATGGAAGAATTCAAAGTTAGTCAATTGTGTCAAGTTTTTCCCGAGTGCAAGCACATTTTTCATTCTGATTGCATAGACCACTGGTTGCAGAAGAAACTAACTTGCCCAATATGTCGTAGTTGTATATAG 561 0.3957 MAEFTELFPLGEQFDGLMHVYVYVITFDLPTLFIVLFILTALFFILYRILNGLFFWLLEMRPIEHDIEEGNTNTHLANYGETEPSHHFTIFHALVHPWALVAAFEGAFNEKRGQRLRASKKLPPLVNYGKHGVTRSCGEECAICMEEFKVSQLCQVFPECKHIFHSDCIDHWLQKKLTCPICRSCI* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2970 186 PANTHER - 18 186 - -
Gso11g2970 186 SUPERFAMILY RING/U-box 136 186 - -
Gso11g2970 186 CDD RING-H2_PA-TM-RING 140 183 - -
Gso11g2970 186 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 18 186 - -
Gso11g2970 186 Pfam Ring finger domain 140 183 IPR001841 -
Gso11g2970 186 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Gso11g2970 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 186 IPR013083 -
Gso11g2970 186 SMART ring_2 141 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2970 Gso-Chr11 45510511 45511071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2970 16 184 C3H Transcription Factor Family AT1G53010 28.814 6.29e-18 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2970 - - gmx:102664186 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1892 12 42753327 42753890 Gso11g2970 11 45510511 45511071 GST