Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2951 ATGGTGCTGTTCAGATGTTTCTCAGTGACACTTTTGCAGTCGTGTTTCTTGGCTTGCTTGCTTTGCTTGTCACTAGGGCTTAATAATAATAATAATAATCAAGCCCTATCCTGTGACCCTCATGATTTATCAGCTCTTAAGGAGTTTGCAGGCAACCTTACAAGTGGCTCTATCATCACAGCATGGCCCAATGACACTTTCTGCTGCAACTGGCTTGGAGTTGTTTGTGCTAATGTGACTGGTGATGCTGGTGGAACAGTTGCTAGTAGAGTGACCAAGTTGATCCTACCAAAAATGAGTCTCAATGGTACAATTTCACCCTCTTTGGCACAGCTAGATCAACTCAATGTGCTGAATCTTTCATTCAATCACCTTAAGGGTGCTTTGCCTGTGGAGTTCTCCAAGTTGAAGCAGTTGAAGTTCCTTGATGTGAGCCATAACATGCTGTCTGGACCTGTTGCTGGAGCTCTTTCTGGTTTGCAATCCATTGAAGTGTTGAATATTTCTAGCAATTTACTTACTGGAGCTCTCTTCCCTTTTGGGGAATTCCCTCATCTCCTTGCTCTCAATGTGAGTAACAATTCATTCACTGGCGGATTCAGTTCACAAATTTGCAGTGCCTCCAAGGATCTTCACACCCTTGATTTGTCTGTAAATCATTTTGATGGCGGTCTTGAAGGCTTGGACAACTGCACCTCTCTCCAACGGTTGCATTTGGATTCCAATGCATTCACTGGTCATCTTCCAGATTCCTTGTATTCAATGTCAGCCTTGGAGGAACTCACAGTTTGTGCCAACAATTTATCTGGCCAGTTAAGCGAGCAACTAAGTAAGCTCTCTAACCTAAAAACTTTGGTGGTTTCTGGGAACAGGTTTTCTGGGGAATTCCCAAATGTGTTTGGGAACCTTTTGCAGCTAGAAGAATTAGAAGCACATGCCAATTCATTTTTTGGACCCTTGCCTTCCACCTTGGCTTTATGCTCTAAGCTTAGGGTGCTTAATCTTAGAAATAATTCCCTGTCAGGGCAAATTGGTCTTAATTTCACTGGCTTGTCTAATCTTCAAACACTTGACCTTGCTACTAATCATTTCTTTGGACCCCTTCCAACTTCCCTGTCCAATTGCCGCAAATTGAAAGTTTTAAGCCTTGCTAGGAATGGTTTAAATGGTTCTGTCCCTGAAAGCTATGCCAACCTCACTTCACTTTTGTTTGTATCTTTCTCAAACAACAGCATTCAGAACTTATCTGTGGCAGTGTCTGTTCTGCAGCAGTGCAAAAATCTCACCACCCTTGTACTTACTAAGAATTTCCGTGGTGAGGTAATTTCAGAAAGTGTGACAGTAGAATTTGAGAGCCTTATGATTTTAGCACTTGGGAATTGTGGTCTTAAAGGCCATATTCCTTCTTGGTTATCCAATTGCAGGAAGTTGGCAGTTCTTGACTTGTCTTGGAACCATTTGAATGGTAGTGTTCCTTCTTGGATTGGTCAGATGGACAGCTTGTTCTATTTGGATTTCTCAAATAATTCTCTCACAGGAGAAATACCAAAAGGTCTGGCAGAGTTGAAGGGCCTCATGTGCGCTAACTGTAATAGAGAAAACCTTGCTGCTTTTGCATTCATTCCTCTCTTTGTTAAGAGAAACACAAGTGTAAGTGGACTGCAATATAACCAGGCATCAAGTTTCCCTCCTTCAATTCTCTTGAGCAATAACATATTGAGTGGGAATATATGGCCTGAAATTGGTCAATTGAAAGCACTGCATGTCTTGGATTTAAGCAGAAACAACATCGCTGGTACCATTCCTAGCACAATTTCAGAGATGGAGAACTTGGAATCATTAGATTTGTCTTATAATGATCTTTCAGGAGAAATTCCTCCATCATTTAACAACCTCACATTCTTGTCAAAGTTCAGTGTGGCACATAATCGCTTAGAGGGACCAATTCCAACTGGAGGGCAGTTTTTAAGCTTCCCTAGTTCAAGTTTTGAGGGCAACCTGGGGCTTTGTAGGGAAATTGATTCTCCTTGCAAAATAGTCAACAATACAAGTCCCAACAATTCTTCTGGTTCTTCCAAAAAACGTGGTAGAAGCAATGTCCTTGGCATAACAATCAGTATAGGGATAGGGCTTGCACTGCTTCTTGCAATTATTCTGCTAAAAATGTCAAAGAGGGATGATGATAAGCCTATGGATAACTTTGATGAGGAACTCAATGGTAGGCCACGCAGGTTATCCGAAGCACTTGCTTCCTCAAAGTTGGTGCTTTTTCAGAATTCAGATTGCAAGGATCTTACAGTTGCAGATTTGTTAAAATCCACAAACAATTTCAACCAGGCAAATATTATTGGTTGTGGTGGGTTTGGTCTTGTCTACAAGGCATATCTTCCAAATGGTGCAAAAGCAGCTGTCAAGAGACTTTCTGGGGACTGTGGTCAGATGGAACGTGAATTCCAAGCTGAAGTAGAGGCCCTCTCAAGAGCTCAACACAAGAACCTTGTTTCTCTGAAAGGTTATTGTCGGCACGGCAATGACAGATTGCTAATATACTCATACTTGGAGAATGGAAGCTTGGATTATTGGCTGCATGAGTGTGTGGATGAAAATTCAGCTCTCAAATGGGATTCAAGACTCAAGGTTGCACAAGGCGCTGCTCGCGGATTAGCTTACTTGCATAAGGGGTGTGAACCATTCATAGTGCATCGAGATGTTAAATCTAGCAACATACTTTTGGATGACAACTTTGAAGCTCATTTGGCTGATTTTGGTCTCTCAAGGCTACTTCAACCGTATGACACTCATGTCACAACTGATTTGGTAGGAACTTTAGGATACATTCCTCCTGAATATAGTCAGACACTGACGGCAACCTTCAGGGGTGATGTCTATAGTTTCGGTGTTGTTCTTCTCGAGCTTCTTACTGGTAGAAGGCCTGTGGAAGTCATCAAGGGGAAAAACTGCAGAAATCTGGTGTCTTGGGTGTATCAGATGAAATCTGAGAATAAGGAGCAGGAAATTTTTGATCCAGTAATTTGGCACAAGGATCATGAGAAACAGCTATTGGAGGTGCTTGCCATTGCGTGTAAATGCCTAAACCAAGATCCTAGGCAGAGACCCTCTATTGAAATAGTTGTTTCATGGCTTGATAGTGTAAGATTTGATGGTTCTCAACAGTGA 3177 0.4193 MVLFRCFSVTLLQSCFLACLLCLSLGLNNNNNNQALSCDPHDLSALKEFAGNLTSGSIITAWPNDTFCCNWLGVVCANVTGDAGGTVASRVTKLILPKMSLNGTISPSLAQLDQLNVLNLSFNHLKGALPVEFSKLKQLKFLDVSHNMLSGPVAGALSGLQSIEVLNISSNLLTGALFPFGEFPHLLALNVSNNSFTGGFSSQICSASKDLHTLDLSVNHFDGGLEGLDNCTSLQRLHLDSNAFTGHLPDSLYSMSALEELTVCANNLSGQLSEQLSKLSNLKTLVVSGNRFSGEFPNVFGNLLQLEELEAHANSFFGPLPSTLALCSKLRVLNLRNNSLSGQIGLNFTGLSNLQTLDLATNHFFGPLPTSLSNCRKLKVLSLARNGLNGSVPESYANLTSLLFVSFSNNSIQNLSVAVSVLQQCKNLTTLVLTKNFRGEVISESVTVEFESLMILALGNCGLKGHIPSWLSNCRKLAVLDLSWNHLNGSVPSWIGQMDSLFYLDFSNNSLTGEIPKGLAELKGLMCANCNRENLAAFAFIPLFVKRNTSVSGLQYNQASSFPPSILLSNNILSGNIWPEIGQLKALHVLDLSRNNIAGTIPSTISEMENLESLDLSYNDLSGEIPPSFNNLTFLSKFSVAHNRLEGPIPTGGQFLSFPSSSFEGNLGLCREIDSPCKIVNNTSPNNSSGSSKKRGRSNVLGITISIGIGLALLLAIILLKMSKRDDDKPMDNFDEELNGRPRRLSEALASSKLVLFQNSDCKDLTVADLLKSTNNFNQANIIGCGGFGLVYKAYLPNGAKAAVKRLSGDCGQMEREFQAEVEALSRAQHKNLVSLKGYCRHGNDRLLIYSYLENGSLDYWLHECVDENSALKWDSRLKVAQGAARGLAYLHKGCEPFIVHRDVKSSNILLDDNFEAHLADFGLSRLLQPYDTHVTTDLVGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTGRRPVEVIKGKNCRNLVSWVYQMKSENKEQEIFDPVIWHKDHEKQLLEVLAIACKCLNQDPRQRPSIEIVVSWLDSVRFDGSQQ* 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2951 1058 Gene3D Ribonuclease Inhibitor 260 370 IPR032675 -
Gso11g2951 1058 Gene3D Ribonuclease Inhibitor 41 155 IPR032675 -
Gso11g2951 1058 PANTHER PHYTOSULFOKINE RECEPTOR 2 566 625 - -
Gso11g2951 1058 PANTHER PHYTOSULFOKINE RECEPTOR 2 621 1051 - -
Gso11g2951 1058 PANTHER PHYTOSULFOKINE RECEPTOR 2 35 170 - -
Gso11g2951 1058 PANTHER PHYTOSULFOKINE RECEPTOR 2 285 444 - -
Gso11g2951 1058 PANTHER PHYTOSULFOKINE RECEPTOR 2 455 522 - -
Gso11g2951 1058 PANTHER PHYTOSULFOKINE RECEPTOR 2 180 288 - -
Gso11g2951 1058 ProSitePatterns Protein kinases ATP-binding region signature. 783 805 IPR017441 GO:0005524
Gso11g2951 1058 Gene3D Ribonuclease Inhibitor 156 258 IPR032675 -
Gso11g2951 1058 SUPERFAMILY Protein kinase-like (PK-like) 760 1048 IPR011009 -
Gso11g2951 1058 SMART LRR_typ_2 584 607 IPR003591 -
Gso11g2951 1058 SMART LRR_typ_2 136 159 IPR003591 -
Gso11g2951 1058 SMART LRR_typ_2 112 135 IPR003591 -
Gso11g2951 1058 SMART LRR_typ_2 231 255 IPR003591 -
Gso11g2951 1058 SMART LRR_typ_2 399 422 IPR003591 -
Gso11g2951 1058 SMART LRR_typ_2 279 302 IPR003591 -
Gso11g2951 1058 SMART LRR_typ_2 498 522 IPR003591 -
Gso11g2951 1058 SMART LRR_typ_2 608 631 IPR003591 -
Gso11g2951 1058 SMART LRR_typ_2 351 375 IPR003591 -
Gso11g2951 1058 Pfam Leucine rich repeat N-terminal domain 40 76 IPR013210 -
Gso11g2951 1058 SUPERFAMILY L domain-like 553 685 - -
Gso11g2951 1058 SUPERFAMILY RNI-like 228 531 - -
Gso11g2951 1058 Pfam Leucine rich repeat 586 645 IPR001611 GO:0005515
Gso11g2951 1058 Pfam Leucine rich repeat 452 511 IPR001611 GO:0005515
Gso11g2951 1058 Pfam Leucine rich repeat 90 149 IPR001611 GO:0005515
Gso11g2951 1058 SMART serkin_6 777 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2951 1058 CDD STKc_IRAK 783 1049 - -
Gso11g2951 1058 ProSiteProfiles Protein kinase domain profile. 777 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2951 1058 Gene3D Phosphorylase Kinase; domain 1 741 852 - -
Gso11g2951 1058 Pfam Protein kinase domain 778 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2951 1058 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 621 1051 - -
Gso11g2951 1058 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 35 170 - -
Gso11g2951 1058 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 566 625 - -
Gso11g2951 1058 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 455 522 - -
Gso11g2951 1058 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 285 444 - -
Gso11g2951 1058 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 180 288 - -
Gso11g2951 1058 ProSitePatterns Serine/Threonine protein kinases active-site signature. 899 911 IPR008271 GO:0004672|GO:0006468
Gso11g2951 1058 ProSiteProfiles Leucine-rich repeat profile. 610 632 IPR001611 GO:0005515
Gso11g2951 1058 Gene3D Ribonuclease Inhibitor 377 681 IPR032675 -
Gso11g2951 1058 Gene3D Transferase(Phosphotransferase) domain 1 853 1054 - -
Gso11g2951 1058 SUPERFAMILY L domain-like 91 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2951 Gso-Chr11 45286997 45291428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2951 48 411 Receptor kinase-like Gene Family AT1G55610 26.185 3.17e-22 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Gso11g2951 Pkinase 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2951 - - gmx:100807582 2015.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1908 12 42958632 42962970 Gso11g2951 11 45286997 45291428 GST