Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2945 ATGGACAACTCTTCCTACCACCACTTGGACCACACTGAAGCTCACTTGCCACCTGGTTTTCGGTTCCACCCTACAGATGAGGAGCTCATAACTTACTACCTTCTCAAGAAGGTTCTTGACAGCACCTTCACTGGTAGAGCCATAGCTGAAGTTGACCTCAACAAGAGTGAGCCATGGGAGCTTCCTGAGAAAGCTAAGATGGGAGAGAAAGAGTGGTACTTCTTCAGCTTACGTGACAGGAAGTACCCAACTGGGTTAAGAACCAATAGGGCTACTGAAGCTGGTTACTGGAAAGCGACTGGGAAAGATAGAGAGATTTATAGCTCAAAAACTTGTTCTTTGGTGGGGATGAAGAAAACCTTAGTTTTCTACCGTGGTAGAGCTCCAAAGGGAGAGAAAAGCAACTGGGTCATGCATGAGTATCGCCTTGAAGGCAAATTTGCTTACCACTACCTTTCTCGCAACTCCAAAGATGAGTGGGTCATATCACGTGTGTTTCAGAAGAGTAACACCGCCACCAACAATGGAGGCTCCGTCATGTCTGCTTCTAGTAACTCCAAGAAGACAAGAATGAACAGCACCACCTCTCTTATCCATGAACCAAGTTCACCCTCCTCAGTTTTCCTTCCACCTCTTCTAGACACTTCACCCTACACCAACACAGCTAACTTCACCGACCGTCACAATGGTTCCTATGACAGCATCACCAAAAAGGAGCACGTGTCCTGTTTCTCCACAATAGCTGCAGCAACAACTGCTGTTGTCTCCCCCAACAACTTCAACAATGCAGGCTTTGACCTTTCACCTTCTCAGCCTCTTGCAACCGACCCTTTTGCCAGGTTTCAGAGGAACGTTGATTTTTCTGCTTTTCCAAGTTTGAGGTCACTACAAGACAACCTTCAGTTCCCTTTCGTCTTTTCCACGGCTGCACCGCCCTTCTCCGGCGGCGGTTCCGGCGACTTTCTCAGTTGGCCGGTGCCGGAGGAGCAGAGGCTGATAGATGGTGTTTCCAACATGCCACTGGGAGTGTCGGAGCTTGATTGCATGTGGAGCTACTAA 1059 0.4854 MDNSSYHHLDHTEAHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKSEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRNSKDEWVISRVFQKSNTATNNGGSVMSASSNSKKTRMNSTTSLIHEPSSPSSVFLPPLLDTSPYTNTANFTDRHNGSYDSITKKEHVSCFSTIAAATTAVVSPNNFNNAGFDLSPSQPLATDPFARFQRNVDFSAFPSLRSLQDNLQFPFVFSTAAPPFSGGGSGDFLSWPVPEEQRLIDGVSNMPLGVSELDCMWSY* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2945 352 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
Gso11g2945 352 Gene3D NAC domain 25 173 IPR036093 GO:0003677|GO:0006355
Gso11g2945 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 348 - -
Gso11g2945 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 7 348 - -
Gso11g2945 352 SUPERFAMILY NAC domain 12 168 IPR036093 GO:0003677|GO:0006355
Gso11g2945 352 ProSiteProfiles NAC domain profile. 16 168 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2945 Gso-Chr11 45197469 45200259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2945 6 352 NAC Transcription Factor Family AT5G53950 53.906 2.03e-121 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso11g2945 NAM 2.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2945 - - gmx:100805987 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1915 12 43049769 43052844 Gso11g2945 11 45197469 45200259 GST