Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2944 ATGGCTCCAAGAGACAGCCGAGCCACCGCGCTCATTGGGCCCGGCCCAAGCCTATCACCGGCCCACAAAGAGATCCGCTACAGAGGCGTCAGGAAACGCCCCTGGGGCCGCTACGCCGCCGAGATCCGCGATCCCGGCAAGAAAACCCGCGTCTGGCTCGGCACTTTCGACACCGCCGAGGAAGCCGCGCGCGCCTACGACACCGCCGCGCGTGAGTTTCGTGGCGCCAAGGCCAAGACCAATTTCCCGACACCCTCGGAACTCATCCTTAACAACAACAACATAAACGCTCGTAGTCCCAGCCAGACCAGCACCCTCGACTCATCCTCTCCCCCGCCACCGCCACCGCTAGACCTTACCCTCACCCCTCTCTCCTCCGCTGTCTTCCCGGTGGCGCGTCCTGTTCTATTCTTCGACGCATTCGCGCGTGCGGACACCATGGTCGCCGTCTCGCGCCGCGAGACCTGCGGCTTCGAACGCCCCGCCGCCGATTTCCGCCGCGGCGACTCCGACTCTGATTATAACCGCCGCATACTCCTGGATCTTGACCTGAACGTGCCTCCTCTCCCGGAGGTTGCCTGA 582 0.6443 MAPRDSRATALIGPGPSLSPAHKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGAKAKTNFPTPSELILNNNNINARSPSQTSTLDSSSPPPPPPLDLTLTPLSSAVFPVARPVLFFDAFARADTMVAVSRRETCGFERPAADFRRGDSDSDYNRRILLDLDLNVPPLPEVA* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2944 193 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 122 - -
Gso11g2944 193 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 131 183 - -
Gso11g2944 193 CDD AP2 26 83 IPR001471 GO:0003700|GO:0006355
Gso11g2944 193 MobiDBLite consensus disorder prediction 1 25 - -
Gso11g2944 193 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Gso11g2944 193 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Gso11g2944 193 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Gso11g2944 193 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Gso11g2944 193 MobiDBLite consensus disorder prediction 84 106 - -
Gso11g2944 193 PANTHER ERF FAMILY PROTEIN 131 183 - -
Gso11g2944 193 PANTHER ERF FAMILY PROTEIN 1 122 - -
Gso11g2944 193 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Gso11g2944 193 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Gso11g2944 193 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Gso11g2944 193 MobiDBLite consensus disorder prediction 82 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2944 Gso-Chr11 45175777 45176795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2944 23 139 AP2-EREBP Transcription Factor Family AT3G15210 66.667 3.86e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso11g2944 AP2 6.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2944 K09286 - gmx:100813652 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1916 12 43070216 43071272 Gso11g2944 11 45175777 45176795 GST
Gso15g0660 15 5915887 5916956 Gso11g2944 11 45175777 45176795 GST