Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2932 ATGGATGAAATGGTGGATTCAGAAATGGATCAACAGATAGAAGATTATCAACATTCTGAACCCGATATCCTTTCGAGAGGAACCACTAGCATCTCGCAGCCTAATAATAACCATGCAATGGTGGGAGAATCTGAGAACACAACTAATGCTGATTCTCACTTTCTGCCAGATGCTTATGACAATGCTAGGGTGTATGGGGTTCCACAATATAATGGTATTCAGCCTCCACATAATCTTGATACGGGTGTACCAGTTGCAACTAACTTATATTATTCTAGCATTAATCCTCCTTCCAGTACTGGTGTTTTTCATCCGCCTCAAAGTCATAGAGCCATTGAACAATTGCCGGGTTCAAACACATTTGAAGTTGCTGGAGGTTCTTCAAATAATTTTGGAAGAAGTTCTAGTTTCATGAATGATGCTAGAGGTCCACATAAAAGGAAAATTCCTAAAGGAATAAGAGGAAATTCACAAGATTTTAATGCTTCGTCGTCTAGCTCTTCAACTGCTCCCCCTAATGCAAGACATGCCAATGATGTTGCTATAATGGATAATACACAATTTCATATCCGTTCACTTGTGGAGGTAGGACCACACGGTAGTGAATGGAGCCGGCCAAATGAGTCTATTATGGTGCATGATCATAATCATTTGATCCATGGAAATTATTTAGGGCAACACTTTCCGCCAATAGCTCCTCCATGGTTGTTCCAACAGTTGAATAGTAACAATAATGATGGCCATGCTACACCCTGGAATCAATCTCTTCCAATGCCTTGTGTGCAAGTGTCAGACAAAGTGCTCAATTTTTTTCTTAAAATTTGTTTGTTGGTTATGAGTTTAGTTTGTCTGACTATCTCTTCATATGCTTTTCCAGCACCCGCTATAAACGGAAGTTCATTAGAGAGTGTAAGTATGGGATTGCAGAGATATCATGATCCAGTTGGAAATCGAAATGGCCTTAGGTTTCCTTATCATGTTCCTGTCAACCAACAACACCATAGTTATCATCACTCAACACTGCCCATGCAAGGAGTAAGAGATCATAGTCTCAACTTCCACCCTACAGTAACTACAAATTCATTTAGGGTTCCAACAAATCCTTTGCGTAATGTTGCAATCCCAACACAAGCTAGTTTTGAGATGGGTCCTAGACATGTTGGCCCTGCACCATCATCTAGCCTCCGAATTTACCGACCTCATAGAGGGGTTGTGCCTGAGACAACTCTCAGACATCGAAGTCTTCCTCCCATGGGCTTCCTTCGAGTTAATGATGTTGCTTTAATTGATGAAGTGGGAAATTTGGTTGACAATCACAGAGATATGCGCTTGGACATAGAGGATATGTCTTATGAGGATCTCATTGCTTTGGGTGAGAGAATTGGCAATGTAAACACAGGTTTATCGGAGGAAACAATTACAACTCAATTGAAGACAAAAACTTATTTAACGGGTGCTACTAGTATTAATATGGAGGAGGAAGTTTGTGATGATCAGGGAACATTTTCTTGTATAATATGTCAGGATGAATTCAAGAACCAAGAGAAGATTGGAGTTCTTCAATGTGAGCATGAATATCATGCAGATTGCTTAAGAACATGGTTGGTGGTAAAAAATGTTTGCCCCATATGCAAATCTGAAGCTTTGAAATCAACTTCTGTGTCTCCTCCTACCTAA 1677 0.4007 MDEMVDSEMDQQIEDYQHSEPDILSRGTTSISQPNNNHAMVGESENTTNADSHFLPDAYDNARVYGVPQYNGIQPPHNLDTGVPVATNLYYSSINPPSSTGVFHPPQSHRAIEQLPGSNTFEVAGGSSNNFGRSSSFMNDARGPHKRKIPKGIRGNSQDFNASSSSSSTAPPNARHANDVAIMDNTQFHIRSLVEVGPHGSEWSRPNESIMVHDHNHLIHGNYLGQHFPPIAPPWLFQQLNSNNNDGHATPWNQSLPMPCVQVSDKVLNFFLKICLLVMSLVCLTISSYAFPAPAINGSSLESVSMGLQRYHDPVGNRNGLRFPYHVPVNQQHHSYHHSTLPMQGVRDHSLNFHPTVTTNSFRVPTNPLRNVAIPTQASFEMGPRHVGPAPSSSLRIYRPHRGVVPETTLRHRSLPPMGFLRVNDVALIDEVGNLVDNHRDMRLDIEDMSYEDLIALGERIGNVNTGLSEETITTQLKTKTYLTGATSINMEEEVCDDQGTFSCIICQDEFKNQEKIGVLQCEHEYHADCLRTWLVVKNVCPICKSEALKSTSVSPPT* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2932 558 MobiDBLite consensus disorder prediction 132 175 - -
Gso11g2932 558 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 130 553 IPR045191 GO:0061630
Gso11g2932 558 SUPERFAMILY RING/U-box 503 553 - -
Gso11g2932 558 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 465 549 IPR013083 -
Gso11g2932 558 MobiDBLite consensus disorder prediction 25 54 - -
Gso11g2932 558 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 130 553 - -
Gso11g2932 558 Pfam Ring finger domain 503 545 IPR001841 -
Gso11g2932 558 SMART ring_2 504 544 IPR001841 -
Gso11g2932 558 ProSiteProfiles Zinc finger RING-type profile. 504 545 IPR001841 -
Gso11g2932 558 MobiDBLite consensus disorder prediction 156 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2932 Gso-Chr11 45079839 45082311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2932 421 551 C3H Transcription Factor Family AT2G15530 43.066 3.89e-34 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2932 K19041 - gmx:100800642 1144.41