Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2929 ATGCATATGTTTGTTCCTCTCCTATGTTTTATGAGCATGCTAAAATTTGCATTAAGAAATGTAGCAGCTGATGATGGCACGCATGTGATGGGCACAAACACAATAGGAGTTATTACAGACAACAAATCTCGCAACGGTAAAGAGGAGATAGTGGCAATTAAGATGGCATTGGAGGATTTCTATCAATATAGCAATCAAAACTTTGGTCTAGATCTTCAGATAAGGAACTCACATGGGGATCCCCTTCAGGCTGCTCTTGCAGCTAGAGATCTTATTGATACAAAGCACGTGGAAGCAATAATAGGACCCCAAACATGGGAAGAGACAACTTTGGTGGCTGACATTTGCAGCCAAAACATGACACCGGTTCTATCTCTAGCTGATGCAACTCCAAACTGGTCAACTTTGAAGTGGCCATTCCTTGTGCAAGCCTCACCTAATCACTTTAAGCAGATGAAAGCAGTAGCAGCTATTGTTCATTCCTTTGGATGGTACGATGTTAACATAGTTTATGATGATAGGGATTCTTCATCCACAAGAATGTTATCTCATCTCTATAGAGCTCTAAGCAAAGCATGTGTGCAAATAAGCAATCTTTTGCCCATCCCATTAATTTCCTCTTCATTGTCCCAAGAACTTGAGAAGCTTAGAGAAGGTCATTGCAAAGTCTTTGTTGTTAATTTGTCCCTTTCTTTGGCCATAAACCTGTTTGAAACTGCAAAAAAATTGAACATGATGGAGAAAGGCTATGTGTGGATCATCACTGATCCTTTTACAAGTCTTGTCCATTCCTTGAAAGCATCCACTATATCCTCCATGCAAGGGATAATTGGAGTTAAGAGCTACTTCCCAGAAATAGGGGTTCAATATGAAGATTTCTACCTTAGATTTCGCCGAAAGTTTAGCTCAGAGAACCCTCAAGAATTTAACAATGAGCCTGGGATATTTGCAGCACGTGCTTATGATGCTGCATGGACTCTTGCTCTAGCCATGACCCAAACCGACAATAAAGGTGGTCAAATTTTGCTAGACAACATTCTGCTTAACAACTTTACTGGCTTAAGTGGAAAAATTCAGTTCACTGACCAGAAGTTAGATCCTTCGAATACTTTTCAGATCACCAATGTGATAGGGAAAGGTTACAAGGAAGTGGGATTCTGGTCAGATGGACTAGGTTTCTCAAATAATATAGGCCAAAATGCTACTACTTTCAATTCTTCAATGAAAGAACTAGGACAAGTTTTATGGCCAGGAAGACCTTGGGGAAATCCAAGAGGATGGACCCCGCCAACAAGTGATAAACCACTAAGAATTGGTGTCCCCGTTTTGGCCACATTGAAACAATTTATAAATGTGATTCAAGACCAAACTGAAAATACTAGCACCTTCCAAGGATTCACTATTGATCTTTTTAGATCAACTATGGAGTTGTTGCCCTATCATTTGCCATACAAATTCTACCCTTTCAATGACACATATGATAATTTGGTGAAGCAAGTCTATTTGAAGAATTTCGATGCAGTAATTGATGTGACAATAATCTCATATCGATATCAGTACGCAGAATTCACTCAGCCATACACTGATCCGGGAGTGGTGATGGTAGTCCCACTTAAATCAAAATTAGCACATAGAACTTGGTTATTTATGAAACCTTATACAAAGACTATGTGGGCTCTAATATTGGCCATGATTATCTACAATGGCTTTATTCTATGGATGTTGGAAAGACGCCACAATCCTGAAATTAGAGGTTCCATGTTGAATCAAACTGGGAGCATGGCTTGGTTGGCATTGACCCCTCTAATCAAGTTAGATGGGGACAGGTTACACAGCAATTTATCAAAGATGGCTATGGTGGTTTGGTTGTTTGTGGTACTCATCATAACACAGACTTACACAGCTAACCTTGCCAGCATGCTAACTGCTGAACGGCTTGAACCTACCATAGATGATATCGATCAGCTACGGAATAGCAACATCAAGGTTGGATATGGTACAGGATCCTTTTTGAAAAATTATGTGCAGAAAGTGTTACAGTTCCACCCTGCAAACATGAGGCACTTTGGAGCACTTGAAGAGTATGCTGAAGCTCTCAGAAGGAAAGAAATAGGAGCTGCCTTTCTTGAAGTTCCTGCAGCCAAAATTTTCCTTGCGAAGTACTGTAAAGAGTTTATTCAAGCCGGGCCTTTGTATAAAATTGGAGGATTTGGATTTGCATTTCCAAGGGGGTCTCCATTTCTTCCAAGTGTAAACAAAGCCCTTCTGGATTTATTTGAAACTGGCAGGGTACGTGAGTTAGAGAACAAAATGCTTGCATCAGAGCAATGTGAAGACACAGAACTAGATGGAGAAGCTGGAAGTCTTAGCCCCAACAGCTTCTGGGTCCTCTTCATATTGACAACAGGCACATCAACTATTGCTCTCTTGGTTTATGTTTTTCGCAGAAGTTATGCAAACCATGAAGAGAGAACAATATGGAGACTACCAATGATGATCATTGAACAATGTGGCCATGCAAAGAGGCGAATCTCAAGAAAAGTTAGTGATGTTACAGAAAGTCCTATGACCTCTCCAACCACACATGCTACTCCAACTCAAGTTTAA 2607 0.4035 MHMFVPLLCFMSMLKFALRNVAADDGTHVMGTNTIGVITDNKSRNGKEEIVAIKMALEDFYQYSNQNFGLDLQIRNSHGDPLQAALAARDLIDTKHVEAIIGPQTWEETTLVADICSQNMTPVLSLADATPNWSTLKWPFLVQASPNHFKQMKAVAAIVHSFGWYDVNIVYDDRDSSSTRMLSHLYRALSKACVQISNLLPIPLISSSLSQELEKLREGHCKVFVVNLSLSLAINLFETAKKLNMMEKGYVWIITDPFTSLVHSLKASTISSMQGIIGVKSYFPEIGVQYEDFYLRFRRKFSSENPQEFNNEPGIFAARAYDAAWTLALAMTQTDNKGGQILLDNILLNNFTGLSGKIQFTDQKLDPSNTFQITNVIGKGYKEVGFWSDGLGFSNNIGQNATTFNSSMKELGQVLWPGRPWGNPRGWTPPTSDKPLRIGVPVLATLKQFINVIQDQTENTSTFQGFTIDLFRSTMELLPYHLPYKFYPFNDTYDNLVKQVYLKNFDAVIDVTIISYRYQYAEFTQPYTDPGVVMVVPLKSKLAHRTWLFMKPYTKTMWALILAMIIYNGFILWMLERRHNPEIRGSMLNQTGSMAWLALTPLIKLDGDRLHSNLSKMAMVVWLFVVLIITQTYTANLASMLTAERLEPTIDDIDQLRNSNIKVGYGTGSFLKNYVQKVLQFHPANMRHFGALEEYAEALRRKEIGAAFLEVPAAKIFLAKYCKEFIQAGPLYKIGGFGFAFPRGSPFLPSVNKALLDLFETGRVRELENKMLASEQCEDTELDGEAGSLSPNSFWVLFILTTGTSTIALLVYVFRRSYANHEERTIWRLPMMIIEQCGHAKRRISRKVSDVTESPMTSPTTHATPTQV* 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2929 868 Pfam Ligand-gated ion channel 771 803 IPR001320 GO:0015276|GO:0016020
Gso11g2929 868 PIRSF IGluLR_plant 1 854 IPR017103 -
Gso11g2929 868 Pfam Bacterial extracellular solute-binding proteins, family 3 460 770 IPR001638 -
Gso11g2929 868 Gene3D - 433 546 - -
Gso11g2929 868 PANTHER GLUTAMATE RECEPTOR 26 862 - -
Gso11g2929 868 Gene3D - 41 369 - -
Gso11g2929 868 MobiDBLite consensus disorder prediction 850 868 - -
Gso11g2929 868 SUPERFAMILY Periplasmic binding protein-like I 34 427 IPR028082 -
Gso11g2929 868 MobiDBLite consensus disorder prediction 845 868 - -
Gso11g2929 868 Pfam Receptor family ligand binding region 52 377 IPR001828 -
Gso11g2929 868 CDD GluR_Plant 434 772 - -
Gso11g2929 868 SUPERFAMILY Periplasmic binding protein-like II 413 770 - -
Gso11g2929 868 Gene3D - 547 684 - -
Gso11g2929 868 CDD PBP1_GABAb_receptor_plant 35 397 IPR044440 -
Gso11g2929 868 Gene3D - 147 388 - -
Gso11g2929 868 SMART GluR_14 437 774 IPR001320 GO:0015276|GO:0016020
Gso11g2929 868 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 26 862 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2929 Gso-Chr11 45052954 45058206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2929 7 828 Ion Channels AT2G29110 32.945 1.32e-149 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2929 - - gmx:100799573 1487.63