Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2927 ATGAACCAAGACCGTGTTAACAATGTCATAGTAAAAATCACTGTAACTCACTGGCATAAGGAGCGTCACGCTCACTCCCTTTTCTCGTGCCCCTCTTCTAATTCTTCTCTCAAAAGGACTGAACGAAAAAACCTTAGGGTTCCTCTGTTCTTCTTCGCCCCCAAAAAAATTTTCTGGCTCAGAGAAATTCAACCGTTCTCGCCATTGCCGAAGCTCCAACTCCTCGCATTTCCAACTCTTCACCCAAAACCCTTTTTGTTGGAACAGAGTTTCACAGAGACCCTTCACAACATGGCAAAAACGAGGCCAGGCAGAAAAGACTTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAGCTGGGGACTGTGTGCTGATGCGCCCCTCTGATACGAGCAAGCCACCGTACGTGGCGCGCGTGGAGAAGATCGAACAGGATAGTAGGAACAACGTGAAGGTGCGTGTGAGGTGGTATTATAGGCCTGAAGAGTCTATTGGAGGACGCAGGCAGTTCCATGGAGCAAAGGAACTGTTTTTGTCTGACCATTATGATGTTCAGAGTGCTCACACAATTGAAGGGAAGTGTATTGTGCACTCTTTCAAGAATTATACCAAGCTTGAGAATGTAGGTGCTGAGGATTACTATTGTAGGTTTGAGTACAAAGCTGCCACTGGGGCTTTCACGCCTGACCGTGTTGCTGTGTATTGCAAGTGCGAGATGCCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTGGTACCATCCTGCTTGCGTGGGCATGACTATTGAAGAAGCAAAGAAATTGGAACATTTTGTTTGTTCAGAATGTTCATCTGATGATGACATGAAGAAACCCCATGCTACATTTTCTGTATCACCAGGATCTGATGTCAAGGTTGAGCCAAAGCGGCGGAAGAGATGA 942 0.4671 MNQDRVNNVIVKITVTHWHKERHAHSLFSCPSSNSSLKRTERKNLRVPLFFFAPKKIFWLREIQPFSPLPKLQLLAFPTLHPKPFLLEQSFTETLHNMAKTRPGRKDLDSYTIRGTNKIVRAGDCVLMRPSDTSKPPYVARVEKIEQDSRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLEHFVCSECSSDDDMKKPHATFSVSPGSDVKVEPKRRKR* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2927 313 CDD BAH_BAHCC1 119 253 - -
Gso11g2927 313 SMART BAH_4 118 233 IPR001025 GO:0003682
Gso11g2927 313 Pfam PHD-finger 237 285 IPR019787 -
Gso11g2927 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 298 IPR013083 -
Gso11g2927 313 PANTHER BNAC03G64850D PROTEIN 99 309 IPR045205 GO:0006325|GO:0035064
Gso11g2927 313 ProSitePatterns Zinc finger PHD-type signature. 238 283 IPR019786 -
Gso11g2927 313 Gene3D - 88 229 IPR043151 -
Gso11g2927 313 SUPERFAMILY FYVE/PHD zinc finger 229 287 IPR011011 -
Gso11g2927 313 MobiDBLite consensus disorder prediction 284 313 - -
Gso11g2927 313 ProSiteProfiles Zinc finger PHD-type profile. 235 286 IPR019787 -
Gso11g2927 313 SMART PHD_3 237 284 IPR001965 -
Gso11g2927 313 PANTHER OS08G0421900 PROTEIN 99 309 - -
Gso11g2927 313 Pfam BAH domain 120 232 IPR001025 GO:0003682
Gso11g2927 313 ProSiteProfiles BAH domain profile. 118 233 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2927 Gso-Chr11 45031717 45035921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2927 128 229 Core DNA Replication Machinery Family AT4G14700 29.126 6.58e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso11g2927 BAH 4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2927 K25868 - gmx:100810424 457.988