Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2922 ATGGTGAGAGGAAGCGGAGGGGAGATAGTTCAAGTTGAAGGCGGTCACATTGTGCGCTCCACAGGGCGGAAGGACCGTCACAGCAAAGTGTGCACCGCCAAAGGCCCTCGTGACCGACGGGTGAGGTTATCGGCCCACACCGCCATCCAATTCTACGACGTCCAGGACCGCTTGGGCTACGACCGCCCCAGCAAGGCCGTCGACTGGCTCATCAACAAGGCCAAGTCCTCCATCGACCAACTCGCCCACCTCCCTCCCTGGAAACCCACTCTCCCCTCACCCGCACCACCTCATCTAAACGACGACCATTCAGACAACCCTAACCCTAACCCTAACCCTAACCCCAACCCCAACCCCAACCCCAACCCCAACCATAGCCCTGATGCCCAAATTCTCAACCAGTTCGACCACGACGATGGAGCTGGAGCTGGTTCCAGTTATCTTCCTATGGATAACGACGCGATAAGGTCGTTCTTCCCCACGACGACTTCCTCGTTGGTTCAATTCCAGAGCTACCCACCGGATTTGCTCTCCAGAACCAGTAGCCAGGACCTGCGTCTCTCGCTTCAGTCCTTGCAAGACCCTATTTTACTTCACCACAACCACAACAACAACGAGCACGTGCTTTTCGCTGGAACCGCCTTTGATAACATGGTAGCGTGGAATAATAATAGTAATAATAATCATAATAATAATAATCATAATAATAATAATAATAATAATAATAATAATAATAATACTGCTTCTAATGATACTTGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGGTTTGTGTTTAACGCTCCTTCGACTTTGCCGGGGCCGGCGACGGTGGCGTCGCCGACGGTGGTGTTTGGTCATGGTTATGGTCAAGGCCAGTATTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACAGCCCTTCCGTTCGTGCGTGGATTGACGCGCCATCGTTCGTCGCTGCTGCCGCCGATCATCGGCATCATCACTATCTGTCTCCCGCGGCAGCGGCAGCGGCGTTGGTGTATCAGTCTGCTCCTTCCACGGCGGCATTTACGGCGGCGCCCGGTGGCTTCTCGGGATTCCGCGTGCCGGCACGAATTCAGGGTGAGGAGGAGCACGACGGCGGCATGTCCGATAAGCCGTCCTCTGCTTCCTCCGATTCTCGCCGTTGA 1197 0.5497 MVRGSGGEIVQVEGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKSSIDQLAHLPPWKPTLPSPAPPHLNDDHSDNPNPNPNPNPNPNPNPNPNHSPDAQILNQFDHDDGAGAGSSYLPMDNDAIRSFFPTTTSSLVQFQSYPPDLLSRTSSQDLRLSLQSLQDPILLHHNHNNNEHVLFAGTAFDNMVAWNNNSNNNHNNNNHNNNNNNNNNNNNTASNDTCGGGGGGGGGGGGGGGGGGFVFNAPSTLPGPATVASPTVVFGHGYGQGQYFSQRGPLQSSNSPSVRAWIDAPSFVAAAADHRHHHYLSPAAAAAALVYQSAPSTAAFTAAPGGFSGFRVPARIQGEEEHDGGMSDKPSSASSDSRR* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2922 398 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 397 IPR005333 GO:0003700
Gso11g2922 398 MobiDBLite consensus disorder prediction 370 398 - -
Gso11g2922 398 MobiDBLite consensus disorder prediction 108 124 - -
Gso11g2922 398 MobiDBLite consensus disorder prediction 1 37 - -
Gso11g2922 398 ProSiteProfiles TCP domain profile. 23 81 IPR017887 -
Gso11g2922 398 Pfam TCP family transcription factor 22 84 IPR017887 -
Gso11g2922 398 MobiDBLite consensus disorder prediction 374 398 - -
Gso11g2922 398 MobiDBLite consensus disorder prediction 221 250 - -
Gso11g2922 398 PANTHER TRANSCRIPTION FACTOR TCP4 2 397 - -
Gso11g2922 398 MobiDBLite consensus disorder prediction 18 37 - -
Gso11g2922 398 MobiDBLite consensus disorder prediction 83 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2922 Gso-Chr11 44988189 44990157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2922 4 397 TCP Transcription Factor Family AT1G53230 44.417 9.85e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso11g2922 TCP 2.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2922 - - gmx:100796938 617.461