Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2921 ATGATTAGCAATGGAGTATGCACTCTCCGCACGTGCCTCCGTTTCCCAGCGAGACCACTATTCCGAGAACCTCCGCGCTTGTTCAGCTGTCGGCAGCGGTTTCTGGTGACTGCGTCGGAAACGAAGAAGAAAGAGAAGGTGATTGTGATTTCTGGACCCACCGGTTCCGGCAAGAGCCGCCTCGCATTGGAACTCGCAAAGCGCCTCAACGGCGAAATCGTCAGTGCCGACTCCGTCCAGGTGTATCGGGGGCTTGATGTTGGATCTGCAAAGCCTTCCCCAAATGAAAGAAAGGAGGTACCACATCATCTGGTTGACATACTGCACCCATCTGAAGACTATTCTGTTGGGCAGTTTTTTGAGGATGCAAGGCAAGCTACAGGATGTATTCTTGACAATGGCCGTGTTCCCATAGTTGTTGGAGGCACTGGATTGTATTTAAGATGGTTCATATATGGAAAGCCAGATGTACCTAAAGCCTCTCCAGAGATTGTATCTGAAGCATATCAAGAGTTAGCTGAACTGCAGAGGAATGATGACTGGGATACAGCTGTGCAGTTGGTGGTAAAAGCAGGTGATCCAAAGGCTCAATTTCTAGCAGTGAATGATTGGTACCGATTACGACGTAGCCTAGAGATTATTAAGTCTAGTGGATCACCTCCTTCTGCTTTTCGGGTACCATATGATTCTTTCAGGGAACAGGGCGAATATGGTGTTGCTGATGGTTCTGAGTTGTCTGATATGAATACTTATGGTGATGCAATGGAAAAAACCAACTCATCAGAGTTAGACTACGAGTTTATGTGCTTTTTCCTTTCTAGCCACAGACTTGACCTCTATAAATCAATTGATTATCGGTGTGAAGATATGCTGTTAGGAAGGGATGGGATTTTGTCTGAGGCTCAATGGCTTCTTGATACAGGTCTTCATCCAAACTCCAATTCTGCAACAAAAGCAATTGGTTACAGACAAGCCATGGAGTACTTACAAAGATGTAGAGAGCAAGGGGGTCACAGTTCTGTTGAAGAATTTTACAAATTCTTGTTTGAATTTCAAAAAGCATCACGGAATTTTGCAAAAAGGCAGTTGACCTGGTTTCGTAATGAAAACATATACCAGTGGCTCGATGCTTCTAAACCTCTGGAAACCATTCTCGACTTCATTCATGGCGCATACCATGATTGGAATGGAAGTATTCTTGTGCCTGAAGACCTAAGAATGTCGAGAGATATTTCTAATCACCGACAAGCTGCACAACTTAAGGCTTACCGCACCAGAAATAGGCATTTCGTGAACGGGGAAGATTGTACTCATATTCTGAACTGGATAAGAAAGACCCAAAGGTGA 1347 0.4469 MISNGVCTLRTCLRFPARPLFREPPRLFSCRQRFLVTASETKKKEKVIVISGPTGSGKSRLALELAKRLNGEIVSADSVQVYRGLDVGSAKPSPNERKEVPHHLVDILHPSEDYSVGQFFEDARQATGCILDNGRVPIVVGGTGLYLRWFIYGKPDVPKASPEIVSEAYQELAELQRNDDWDTAVQLVVKAGDPKAQFLAVNDWYRLRRSLEIIKSSGSPPSAFRVPYDSFREQGEYGVADGSELSDMNTYGDAMEKTNSSELDYEFMCFFLSSHRLDLYKSIDYRCEDMLLGRDGILSEAQWLLDTGLHPNSNSATKAIGYRQAMEYLQRCREQGGHSSVEEFYKFLFEFQKASRNFAKRQLTWFRNENIYQWLDASKPLETILDFIHGAYHDWNGSILVPEDLRMSRDISNHRQAAQLKAYRTRNRHFVNGEDCTHILNWIRKTQR* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2921 448 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 9 37 447 - -
Gso11g2921 448 Hamap tRNA dimethylallyltransferase [miaA]. 47 386 IPR018022 GO:0008033
Gso11g2921 448 Pfam IPP transferase 80 369 - -
Gso11g2921 448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 383 IPR027417 -
Gso11g2921 448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 180 IPR027417 -
Gso11g2921 448 TIGRFAM miaA: tRNA dimethylallyltransferase 47 224 IPR018022 GO:0008033
Gso11g2921 448 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 37 447 IPR039657 -
Gso11g2921 448 Gene3D - 44 437 IPR027417 -
Gso11g2921 448 Gene3D - 155 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2921 Gso-Chr11 44953704 44960356 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2921 50 330 C2H2 Transcription Factor Family AT2G27760 25.260 1.87e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2921 K00791 - gmx:100808814 917.916