Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2919 ATGCCTTTCTTCTCACTTTTGCATGCACACAAACACACAATGGAGTCACCATTCAAGCCCATCTCATGCACCAGAAAAACTCCATACAGAATTGAAACCAAGAACTTGTCATACAAGTTGTGCAGCCAGCTTGATGAGTGTAGAAGCCTTTGTTTTGGTTCCAATCCGGGGAGAGGTGCCAAGTTCATTTTGAAGGATGTGAATTGTGAGGCAAGGCCAGGGGAGATTACTGCTATTGCTGGCCCTAGTGGAGCTGGAAAAACCACACTGCTTGAGATTCTTGCTGGCAGAATACCACCATGTAATAAAGTGTCTGGCCATGTTCTTGTCAATCATAGGCCTATGGATGTGAACCAATTTAGAAGGACATCAGGGTATGTCACGCAAGATGATGCTTTGTTCCCATCACTGACAGTTAGAGAGACACTCATGTATAGTGCCATGCTGAGGCTTCCCGGGGGAAGAAAAGTTGCTGCCATCAGAGTTGAAGATTTGATGAAGGAGCTTGGATTGGACCACATTGCAGATTCAAGAATTGGAGGTGGATCAGACCACAGCATATCCGGCGGTGAAAGGCGTAGAGTTTCCATTGGTGTCGACTTGGTTCATGACCCTGCAGTTATTTTGATTGATGAACCAACTTCAGGGCTGGATTCAGCATCAGCTCTTAGTGTGGTCTCATTGCTTAGGCTTGTGGCATTTAACCAACGTAAGACAATTATTTTAACCATCCACCAACCTGGTTTCCGAATCCTGGAGCTATTTGATGGCCTCATTTTGCTGTCTGATGGATTTGTGATGCATAATGGATCATTGAATCTTCTTGAGGCTAGGCTTAAGTTAGCCGGGCACCACATTCCTGACCATGTCAATGTCCTCGAGTTTGCTCTTGATGTCATGGAATGCTTGGTTATACACACTTCAGAATCTGAGGACAACCAGTTTCTGCTCAAAGAGAACCAAGATCACAGAATGAGGATGCAGTACTCTAAGGTGGTGAAAGAAAAGGCACTTATGTACTCAAATTCTCCAATGGAGGAGATTTCAATCCTAGGACAAAGATTTTGCTGCAACATATTCAGAACCAAGCAACTCTTTGTCACCAGGGTCATGCAAGCCTTAGTAGCTGGTTTTATTCTTGGGAGCATATTTTTCAATGTTGGCAGTCAACAAAGTCATGTGGCATTGCAAACTAGAAGCGGCTTCTTTGCTTTCAGCCTTACCTTTTTGCTATCATCAACAACAGAAGGCTTGCCTATTTTCTTGGAGGAGAGAAGAACTTTTATGAGAGAGACCTCAAGAGGAGCTTATAGAGTTTCTTCCTATGTTTTAGCAAACACCCTTGTGTTCCTTCCTTTCCTTCTATTGGTTGGTCTTCTGTATTCTACTCCAGTGTATTGGCTTGTAGGATTAAGGAAAGACATTGATGGTTTCCTTTACTTCTCCTTAGTGGTTTGGTTGGTCCTACTCATGTCGAATTCTCTTGTGGCTTGTTTCAGCGCTCTAGTGCCAAATTTCATCCTTGGAACCTCAGTGATTGCAGGTCTAATGGGGTCTTTCTTTCTGTTCTCAGGGTATTTCATATCAGAGGAAAAAATACCAAGTTACTGGATTTTTATGCACTATTTGAGCCTTTTCAAGTATCCATTTGAGTGCCTTGTGATAAATGAGTATGGACGAGAGCAAGGGAAAATGAGATGCTTAGAAATTAGCAATGGAAAATGCATACTATATGGAGCTGAATTCTTAAGACAACAGGGTCTGAGAGATTCACAAAAATGGACCAATTTGGCTGTAATGTTGAGCTTCATAGTGGGGTATAGAGTGCTTAGCTTTATTATTCTTTGGTTCAGATGTTACAGGACCAGAAAATAG 1875 0.4251 MPFFSLLHAHKHTMESPFKPISCTRKTPYRIETKNLSYKLCSQLDECRSLCFGSNPGRGAKFILKDVNCEARPGEITAIAGPSGAGKTTLLEILAGRIPPCNKVSGHVLVNHRPMDVNQFRRTSGYVTQDDALFPSLTVRETLMYSAMLRLPGGRKVAAIRVEDLMKELGLDHIADSRIGGGSDHSISGGERRRVSIGVDLVHDPAVILIDEPTSGLDSASALSVVSLLRLVAFNQRKTIILTIHQPGFRILELFDGLILLSDGFVMHNGSLNLLEARLKLAGHHIPDHVNVLEFALDVMECLVIHTSESEDNQFLLKENQDHRMRMQYSKVVKEKALMYSNSPMEEISILGQRFCCNIFRTKQLFVTRVMQALVAGFILGSIFFNVGSQQSHVALQTRSGFFAFSLTFLLSSTTEGLPIFLEERRTFMRETSRGAYRVSSYVLANTLVFLPFLLLVGLLYSTPVYWLVGLRKDIDGFLYFSLVVWLVLLMSNSLVACFSALVPNFILGTSVIAGLMGSFFLFSGYFISEEKIPSYWIFMHYLSLFKYPFECLVINEYGREQGKMRCLEISNGKCILYGAEFLRQQGLRDSQKWTNLAVMLSFIVGYRVLSFIILWFRCYRTRK* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2919 624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 280 IPR027417 -
Gso11g2919 624 Pfam ABC-2 type transporter 347 558 IPR013525 GO:0016020|GO:0140359
Gso11g2919 624 SMART AAA_5 73 265 IPR003593 -
Gso11g2919 624 Pfam ABC-2 type transporter 245 312 IPR043926 GO:0140359
Gso11g2919 624 Pfam ABC transporter 64 215 IPR003439 GO:0005524
Gso11g2919 624 PANTHER ABC TRANSPORTER G FAMILY MEMBER 10 14 616 - -
Gso11g2919 624 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 14 616 - -
Gso11g2919 624 ProSitePatterns ABC transporters family signature. 187 201 IPR017871 GO:0005524
Gso11g2919 624 Gene3D - 30 288 IPR027417 -
Gso11g2919 624 CDD ABCG_EPDR 54 270 - -
Gso11g2919 624 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 31 288 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2919 Gso-Chr11 44946234 44948542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2919 54 271 Calmodulin-binding Proteins AT2G36910 25.221 3.21e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2919 K05681 - gmx:100807754 1200.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1933 12 43263773 43266009 Gso11g2919 11 44946234 44948542 GST