Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2917 ATGTTGATCAACAAAGAAACAGAGGATTTATGTGATGATAACTTTGAAGGATCTAATGAAGAAAGACAGATTTTTTCAGAGGTCTTTTCTGGTAATGGCATTTTTCAGTCTAATCAGAAGTGTCTTGTTCCTGTAGCTATCAGCTTTGAACATGAATCCGCTAAAAACACATTTAAATCATTCTGCTCTAGTAATGAAAACTCAGTTGTATTGCATCCCTCATCTTCTAGACTTACACACCCTGAAGAAGAGGACTTTAATGTAATTCGGCATTCCAAAGAGGCTGCTCTGGGGTGTGTGCCAGAGAGTTTCATTTGTGAAGACCAGAATGATGAGGATGTGAATGTCAAACGTATGAAGTTTTCTCCGCATGAACTTGCTTGTAGTAGATCTGATTCAGAAAAAAATATGAGTTCATCACGACTTTCAAAAGTAGTAGTTTCTAACCTGTCTTGTGCTGTTACGAGCTGTGATAGTGAATCTATTACATTTCGTTTAGTTGAATCATCTAAACATGGTGTGATATCTGGCTGTTATCTATTGAACCATAACAAGTTAAATAAACAAGCTGCCAAGGATGATGTAGATGTTAACTCAACAACAGCAGATGAAAATATTGCAAAAGAGGCGCGTGTAAGTAAAGCAGCTGCTTCTCCTGTTTCCCAGGAAAGCTTTGCAAACAGGCTTGTAGTTACAAGTCCGTCAACCACTGTTGTGAAGAAGTCTGGGTCTCCTTTAAATCCTGAGGAAATGCCGGTATCTTCTAATGTGGACATCTCAAATGCATTCTCAATGCTAGAGGAAGAGGACCCCCGTACTATACTGCAGGTTCATATTGTGCAGTTGCTTAAGATGGCAGGATGGTCTATTGAGAAGCGTCAGCGGCCTAGTAGGCGTTACCCAGAGTCAGTTTATAGGACACCAGAGGGAAAGACTGTTCGGGAGTTTACAAAGGCTTGGAGATTATGTGGTGAGCTATTGTCTGTTGAAAAATGCAATTTTATGTGCAGAGATTATAAGGAATGGACTGATATTAGTCAATTCTGGTCTGATCTATCCAGTGCACTGATAAAGGTTGAAAAAACAAAGATGCAGTCAGGAGACCCTGCTGCTATATTGGCTTATCAATGGTGGCTTTTGGATCCTTTTGTAGTAGTTATATTTTTTGATAGAAAGATTGGTGCGCTGAAAAAGGGAGAGGTAGTGAAAGCAACTTGGAGTTTAGTTTCTAGCAAGTATAAGGTGGCATGTGCTCCCATTGGTTCAAGCTCTGGAAATTTGAATCAGGTACCTGGAGGGTCTAATGTAAATGCTGTTCATCAAGCCAAAATTAGAAATTCCGAAAGTGTTGATAAACAGATTTCAGAAAACTATCTGGAAACAAATAAAATCATTGATGGAGATGTGCCAATGGACATGTCAGAAGAAAATAATGCATCCGGTGTGAGCCATGACCTGGTTCATTCTCATGACTCTAGGGCTATGCAACCGTCTGAATGTAGTGAGGAAGAGGGTGGCAAAATCTCAGTAGATTCTGTATTTGGGAGGGATAACAAGTATTCTGCTTCTAATGTTATTCTTAAAAAGAAAATGCGGAGGAAGTGCAAAAGGGTATCTGAAATCAAATTGAGTATGTTCTACCATGGTGACATGCTGGGCTCAACTGTTACTGACCAGGTGCAGTCACTAGATGGTGAAGCAAGTGGGTTGGAAGAGGTCCAGGATTATCTAGTTGACAATGCGAGAAAGAAAAGAAACTGCAGAAAGTTATCATCTGTTGGTGCAATTCAGAGAAATATTAGGAAAACAAACTGCCCCACAGCTGGAACAGATAAGTCTAACAGATGCCTGATTAAAGACGATGATTTATTGGTGTCTGCAATATTCAGGAATAAGGACTTCAGCCCAAAGACGATCCGGGGTAATTCTAGTGCTAAATCCTGCAAATCAAGGGGTCAGAGAAAGTTTAAAAGCCAAAAGGGCCGATGCAGGTTGCTACCAAGGAATCCCTCTAATGCAGGGAAGCACAATAAGGACGGCAATAGGTTTTATTTGGGTGCAAGGACTATATTGTCCTGGTTGATTGATAATGGGGTCATATCTTTAAGTGATGTGATTCAGTACCGAAATCCTAAGGATAATGTTGTCATTAAGGATGGTAGGATCACCAAAGATGGTATTATTTGTATATGTTGTGGTAAGGTGCTCACATTATCAGAGTTCAAGTTTCATGCTGGTTTTACACTGAATCGCCCCTGCTTGAATATTTTCATGGAGTCTGGTGAGCCCTTTACACTGTGCCTCCTTCAAGCTTGGTCAACTGAATACAAAGCCAGGAAAAGCCAGAATCAAGCTGTACATGCTGATGAAAATGATAAAAATGATGATTCGTGCGGATTGTGTGGCGAGGGGGGTGAGCTGATATGTTGCGATAACTGTCCATCTACTTTTCACCTAGCTTGTTTGTCCACTCAGGAGATCCCAGATGGCGACTGGTACTGCACTAACTGCACTTGTAGGATATGTGGAAATTTGGTCATTGACAAAGACACTTTAGATGCGCATGATTCATTACAATGTTCACAGTGCGAACATAAATATCATGAGAAATGCCTTGAAGATAGAGATAAACAAGAAGGAGCAATTTTGGACACTTGGTTTTGTGGTCAGAGTTGTCAAGAGGTGTACTCTGGACTCCAGTCTCAGGTGGGGTTAGTTAATCAAGTTGCTGATGGCATCTCATGGACCCTTCTTAGATGCATCCACGATGACCAAAAAGTTCACTCTGCACAGTGGTTTGCCCTAAAGGCAGTATGCAATACAAAATTAGCCGTTGCTCTTACTATCATGGAGGAGTGTTTTGTGTCAATGTTTGATCCAAGAACAGGCATCCACCTGATACCCCAAGTTTTATACAACTGGGGATCTGAGTTTGCTCGTCTAAACTTTCAAGGGTTTTACACCATCGTGTTGGAGAAAGACGATGTGTTAATATCTGTAGCATCTATCAGAGTGCATGGAACTACAGTAGCAGAGATGCCTCTAATTGCAACTTGCAGTCAGTATCGTCGCCAGGGAATGTGCCGACTCCTTGTGAGTGCTATTGAACAGGTGTTAATATCTTTCAAGGTGGAAAAGCTTGTGATATCAGCCATTCCAGATTTGGTTGAGACGTGGACAAAGGGCTTTGGATTTATACCTGTTGATGACATCGAAAGGCAAAGATTGAATAAAATTAACCTGATGGTTTTTCCTGGGACAGTGTTACTTGTGAAATCCTTGCATTGGAAAGAGAAAATTGAAGCTCAAACAGGACTGTGTGATCAATCAACTCTAGCAACAGATGAATCAATCAAAGCAGGCATCTGTTCTGAAGGAATGGCCATTTCTGAATCAATGGCACAAGATATTGGAAACATAACTACCAACAAAGGTGAAGCAAAGTCAGAACATGAACCTGTGGATGGAAAAAATCAATCAGACTATGAAGCTGGCAGTGAAACCGGCAGAGATGACAAAACACAAGCTGTTGACACTGCATTAGAAGCCAAAGAATCAACAGAAATAAGTAGCTTTTCTAAAGAAGAGAAGATCTCCTACTTGGAAGTGTCAGGTGGCTCAGAGAAATCTATTGAAGAAAAGAATGTGAAGGAATTGAGAACAAGCAATAATGCAGAAATGGCAAATGAATCAGTACAGCAATCTAGTGAGAATTGTGCTGACAAAGATGGTGCTGAACCAGGTATTAGTATTGTTGAGGACAAGAATATCAAAATAGGTGAGGATCAGCAAAATGCTTTGCAGGGCCATTTTTCAAATCTGTCCTGCAAAACATTTTTAGGCAGCAATTTTGACACGGATTCCAATATTGAATGCTCAGTGATGTATGATGAAACAGCTTTTTTTGGGACTTTTGCAAAGTCTGCAAGCTGA 3933 0.4055 MLINKETEDLCDDNFEGSNEERQIFSEVFSGNGIFQSNQKCLVPVAISFEHESAKNTFKSFCSSNENSVVLHPSSSRLTHPEEEDFNVIRHSKEAALGCVPESFICEDQNDEDVNVKRMKFSPHELACSRSDSEKNMSSSRLSKVVVSNLSCAVTSCDSESITFRLVESSKHGVISGCYLLNHNKLNKQAAKDDVDVNSTTADENIAKEARVSKAAASPVSQESFANRLVVTSPSTTVVKKSGSPLNPEEMPVSSNVDISNAFSMLEEEDPRTILQVHIVQLLKMAGWSIEKRQRPSRRYPESVYRTPEGKTVREFTKAWRLCGELLSVEKCNFMCRDYKEWTDISQFWSDLSSALIKVEKTKMQSGDPAAILAYQWWLLDPFVVVIFFDRKIGALKKGEVVKATWSLVSSKYKVACAPIGSSSGNLNQVPGGSNVNAVHQAKIRNSESVDKQISENYLETNKIIDGDVPMDMSEENNASGVSHDLVHSHDSRAMQPSECSEEEGGKISVDSVFGRDNKYSASNVILKKKMRRKCKRVSEIKLSMFYHGDMLGSTVTDQVQSLDGEASGLEEVQDYLVDNARKKRNCRKLSSVGAIQRNIRKTNCPTAGTDKSNRCLIKDDDLLVSAIFRNKDFSPKTIRGNSSAKSCKSRGQRKFKSQKGRCRLLPRNPSNAGKHNKDGNRFYLGARTILSWLIDNGVISLSDVIQYRNPKDNVVIKDGRITKDGIICICCGKVLTLSEFKFHAGFTLNRPCLNIFMESGEPFTLCLLQAWSTEYKARKSQNQAVHADENDKNDDSCGLCGEGGELICCDNCPSTFHLACLSTQEIPDGDWYCTNCTCRICGNLVIDKDTLDAHDSLQCSQCEHKYHEKCLEDRDKQEGAILDTWFCGQSCQEVYSGLQSQVGLVNQVADGISWTLLRCIHDDQKVHSAQWFALKAVCNTKLAVALTIMEECFVSMFDPRTGIHLIPQVLYNWGSEFARLNFQGFYTIVLEKDDVLISVASIRVHGTTVAEMPLIATCSQYRRQGMCRLLVSAIEQVLISFKVEKLVISAIPDLVETWTKGFGFIPVDDIERQRLNKINLMVFPGTVLLVKSLHWKEKIEAQTGLCDQSTLATDESIKAGICSEGMAISESMAQDIGNITTNKGEAKSEHEPVDGKNQSDYEAGSETGRDDKTQAVDTALEAKESTEISSFSKEEKISYLEVSGGSEKSIEEKNVKELRTSNNAEMANESVQQSSENCADKDGAEPGISIVEDKNIKIGEDQQNALQGHFSNLSCKTFLGSNFDTDSNIECSVMYDETAFFGTFAKSAS* 1311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2917 1310 MobiDBLite consensus disorder prediction 638 678 - -
Gso11g2917 1310 Pfam Tify domain binding domain 720 770 IPR032308 -
Gso11g2917 1310 Pfam PHD-finger 798 839 IPR019787 -
Gso11g2917 1310 SUPERFAMILY FYVE/PHD zinc finger 780 838 IPR011011 -
Gso11g2917 1310 MobiDBLite consensus disorder prediction 1145 1175 - -
Gso11g2917 1310 ProSiteProfiles Zinc finger PHD-type profile. 795 840 IPR019787 -
Gso11g2917 1310 MobiDBLite consensus disorder prediction 1144 1175 - -
Gso11g2917 1310 MobiDBLite consensus disorder prediction 1227 1247 - -
Gso11g2917 1310 Gene3D - 942 1080 - -
Gso11g2917 1310 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 948 1095 IPR000182 GO:0016407
Gso11g2917 1310 CDD PHD2_CHD_II 797 837 - -
Gso11g2917 1310 PANTHER PHD FINGER PROTEIN 12 1 458 IPR042163 GO:0003714|GO:0045892
Gso11g2917 1310 PANTHER PHD FINGER PROTEIN 12 459 1308 IPR042163 GO:0003714|GO:0045892
Gso11g2917 1310 PANTHER INCREASED DNA METHYLATION 1 459 1308 - -
Gso11g2917 1310 PANTHER INCREASED DNA METHYLATION 1 1 458 - -
Gso11g2917 1310 CDD NAT_SF 989 1050 - -
Gso11g2917 1310 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 948 1071 IPR016181 -
Gso11g2917 1310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 781 855 IPR013083 -
Gso11g2917 1310 SMART PHD_3 797 838 IPR001965 -
Gso11g2917 1310 SMART PHD_3 839 893 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2917 Gso-Chr11 44926178 44936350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2917 1 1107 PHD Transcription Factor Family AT3G14980 40.796 0.0 779
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso11g2917 TDBD 6.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2917 - - gmx:100795889 2590.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1935 12 43279035 43288883 Gso11g2917 11 44926178 44936350 GST