Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2915 ATGTCGCATTCGTCGGGGAAGCCGGTTTCCGAGGTGGTCGGCATAGACGCCACCTTCTCCGATCGGTTCCGCGACGCCCTCACCTGCGACGACAATAACAACATTAACAAGCCCGACTTCCGAGAACTCGATCTGGGCTCGCCGGTCTCGCCATTGCGGACCACGCGCGGGCCTGCTGCCAGTAGCAGCTCCAGCTCCTCCGGTTCCTTTTCGGGCCGAACCGGACCCACCCGAAAGCCCGAATCGGCACAAAATAATAGCAACACCAACACTCACATTCACAGCAATAACAACAACTCCGGTGAACTTTCTGGTTCGAGTGAGAACAGTCCCACTGCGCGCAAGCCGGGTCACACGAGATCTGACTCCGGATCTGCGCCCGTTCCCTTGATATATTCCGGTCAGACAGCGACCTCGCCTGTGATGAATGTTCTTCCCACAGGAAACATTTGTCCATCCGGGAAGATCTTGAAGACGGGGATGACTCCGAATCGGAGTAGCAGAACTAGTAGAAGCGATGTGTTGGGGTCGGGGATGGGGAACTATGGCCACGGGAGCATAATGCGCGGCGGAGGGAAGGCTGAGCCGGCGAGTACTCGCGGCAGTGGCGGCGGGAATGAGATGGTGAAGAGAGGGGGACACGTGCGGAGTGTGGATCCGGAAGAGTTGAAGAGGTTGGGGAATGAGTGTTACAAAAGGGGAAACTTTGTTGATGCGTTGAGTCTCTATGATCGCGCGATTGCGATGTCGCCGGCGAGTGCCGCTTACCGGAGCAACCGTGCGGCGGCGTTGACGGGGCTCGGAAGGTTGGGTGAGGCTGTGAGGGAATGTGAGGAGGCTGTGAGGTTGGATCCTAATTATGGGAGGGCTCATCAGCGTTTGGCTTCTCTTTTCCTTAGGTTGGGACAAGTTGAGAATGCAAGGAAGCACCTTTGTTATCCTGGGATGCAGCCAGATCCGTCTGATATGCAGAGGTTGCAAGTGGTGGAAAAGCATATCAGCAAATGTGGGGATGTACGGAGGGTTGGGGATTGGAAGAGTGTTCTCAGGGAAGTTGATGCTGCTGTTGCTGCTGGAGCGGATTCTTCTTATCAGCTCTTTATGTGTAGAGCAGAAGCGTTTTTGAAGCTCCACCAGATTGATGATGCGGAATCAATTTTGTTGCATATTCCCAAATCAGAGCCGCACACTAATTCCTCTTCTCAGGCAAGGTTTTTTGGGATGCTATGTGAGGCTTATTCCTATTTTGTCAGAGCTCAGATTGAGATGGCATTGGGAAGGTTTGAGAATGCGGTTACAGCTGCTGAGAAAGCCAGTCAGAATGATTCCCGGAATGTTGAAGTTGCTGTTTTGCTCAACAATGTCAGGATGGTGGCAAGGGCTCGAGTGCGGGGAAATGATCTTTTTAAATCTGAAAGGTACACTGAAGCTTGCTTGGCGTATGGGGAAGGTTTGAGACTTGACCCTTCAAATTCCGTTCTATATTGCAATAGAGCAGCTTGTTGGTTTAAGCTTGGGCAATGGGAAAGGTCAATTGAAGACTCCAACCAAGCTTTACATATCCAACCAAATTACACCAAGGCTCTTCTTCGAAGAGCTGCATCAAACAGCAAGCTAGAAAGGTGGGAGGAAGCAGTCAAAGATTATGAGATCTTGCGGAAAGAACTTCCAAATGACAATGAAGTTGCTGAATCTCTTTTCCATGCACAAGTTGCCCTAAAGAAATCACGTGGAGAAGAAGTAACAAATTTAAAATTTGGTGGTGAAGTGGAAGAAGTCTCAGGTCTTGAGCAGTTTAGAGCTGCAATTTCTTTACCAGGTGTATCTGTTGTCCATTTTGAAGTTGCATCTAACTCGCAATGCAAACAAATATCGCCATTTGTCAATACACTATGTGGTCGATATCCATCTATTAACTTCCTCAAGGTGGACATTCAACAAAGCCCAACAGTTGCCACTGCAGAGAACGTTAGGATTGTACCGACCTTCAAGATATACAAAAATGGCTGCCGGCTGAAGGAAATCGTATGCCCTAGTCACGACATGTTGGAACACTCTGTGAGGCATTACAGCTTTTAG 2079 0.4978 MSHSSGKPVSEVVGIDATFSDRFRDALTCDDNNNINKPDFRELDLGSPVSPLRTTRGPAASSSSSSSGSFSGRTGPTRKPESAQNNSNTNTHIHSNNNNSGELSGSSENSPTARKPGHTRSDSGSAPVPLIYSGQTATSPVMNVLPTGNICPSGKILKTGMTPNRSSRTSRSDVLGSGMGNYGHGSIMRGGGKAEPASTRGSGGGNEMVKRGGHVRSVDPEELKRLGNECYKRGNFVDALSLYDRAIAMSPASAAYRSNRAAALTGLGRLGEAVRECEEAVRLDPNYGRAHQRLASLFLRLGQVENARKHLCYPGMQPDPSDMQRLQVVEKHISKCGDVRRVGDWKSVLREVDAAVAAGADSSYQLFMCRAEAFLKLHQIDDAESILLHIPKSEPHTNSSSQARFFGMLCEAYSYFVRAQIEMALGRFENAVTAAEKASQNDSRNVEVAVLLNNVRMVARARVRGNDLFKSERYTEACLAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDSNQALHIQPNYTKALLRRAASNSKLERWEEAVKDYEILRKELPNDNEVAESLFHAQVALKKSRGEEVTNLKFGGEVEEVSGLEQFRAAISLPGVSVVHFEVASNSQCKQISPFVNTLCGRYPSINFLKVDIQQSPTVATAENVRIVPTFKIYKNGCRLKEIVCPSHDMLEHSVRHYSF* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2915 692 Pfam Tetratricopeptide repeat 413 442 IPR019734 GO:0005515
Gso11g2915 692 Gene3D Tetratricopeptide repeat domain 218 578 IPR011990 GO:0005515
Gso11g2915 692 SMART tpr_5 412 445 IPR019734 GO:0005515
Gso11g2915 692 SMART tpr_5 220 253 IPR019734 GO:0005515
Gso11g2915 692 SMART tpr_5 526 559 IPR019734 GO:0005515
Gso11g2915 692 SMART tpr_5 492 525 IPR019734 GO:0005515
Gso11g2915 692 SMART tpr_5 254 287 IPR019734 GO:0005515
Gso11g2915 692 SMART tpr_5 458 491 IPR019734 GO:0005515
Gso11g2915 692 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 16 690 IPR044534 -
Gso11g2915 692 Pfam Thioredoxin 598 681 IPR013766 -
Gso11g2915 692 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 16 690 - -
Gso11g2915 692 MobiDBLite consensus disorder prediction 155 216 - -
Gso11g2915 692 MobiDBLite consensus disorder prediction 54 119 - -
Gso11g2915 692 MobiDBLite consensus disorder prediction 26 133 - -
Gso11g2915 692 CDD TRX_family 597 678 - -
Gso11g2915 692 Gene3D Glutaredoxin 585 691 - -
Gso11g2915 692 ProSiteProfiles TPR repeat profile. 220 253 IPR019734 GO:0005515
Gso11g2915 692 MobiDBLite consensus disorder prediction 159 176 - -
Gso11g2915 692 SUPERFAMILY Thioredoxin-like 495 690 IPR036249 -
Gso11g2915 692 Pfam Tetratricopeptide repeat 226 286 - -
Gso11g2915 692 ProSiteProfiles TPR repeat profile. 492 525 IPR019734 GO:0005515
Gso11g2915 692 SUPERFAMILY TPR-like 220 447 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2915 Gso-Chr11 44893846 44897542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2915 457 602 U-box Gene Family AT3G07370 27.869 1.24e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2915 - - gmx:100795358 1317.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1936 12 43310838 43314906 Gso11g2915 11 44893846 44897542 GST