Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2903 ATGTCGCTGAGGAAGGTCTTCCGCTCCCGCAAGTTCTCCAGATCGTTCAAGGAGGTGCTGCCGGCGGAGGGCGCCGCAATTGTCGGCGGCGAGGACGGGGTCGCCGGCGCCGGTGAGGAGTCGTCGAATGGGAATAATGGTTGGTCCAACATGCTTCCAGAGATCCTCGGCGAGATCGTGCGGCGCGTGGATGCCGCCGAGGAACAGTGGCCGAACCGCCAGAACGTCGTCGCATGCGCGTGCGTCTGCAAGCGTTGGCGTGACATCACGCGCGAGGTCGTGCGCGTGCCCTCCCACACCGGGAAAATAACCTTCCCTGCGTGCCTTAAGCAGCCAGGACCACGTGACGTTCCCCACCAATGTCTTATAAAGCGGAACAAGAAAACTTCAACTTTTTATTTATATCTTGCCCTTACACCATCATTCACAGATAAAGGGAAGTTTCTGCTAGCAGCTAGGAGATATAGGTGTGGTACTCATACCGAGTATATAATTTCACTTGATGCTGATGATTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGCTAAGCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCATAGTGGTGCAAAACCATCAAGTGGCAGGGCCAGCCGTCGGTTTGCCAGCAAGCAGATAAGCCCACAAGTTCCTGCAGGTAACTTTGAGGTGGGGCAGGTCTCCTACAAGTTCAACCTTTTGAAATCAAGAGGGCCAAGGAGAATGGTTTGCTCATTGAAGTGTCCCGTGACTCCTGTCGTCTCACCATCGGTTGAAAGTTCAGATAGCACGCCGGTCAATGGCCATAAGATTCCCGATAAAGAACAAGTTGCATCTGGCTACACAATCTTGAAGAATAAAGCTCCAAGGTGGCATGAGCATTTGCAATGTTGGTGCTTGAATTTCCATGGCCGTGTGACAGTGGCCTCGGTGAAGAACTTTCAGCTGGTTGCAACAGTGGACCAAAGCCAACCAGGAGGGAAAGGAGATGAGGAAACAGTTCTCCTCCAGTTTGGTAAAGTAGGGGATGATACTTTTACCATGGATTATAGACAGCCCTTGTCTGCTTTCCAGGCTTTTGCCATTTGCTTAACTAGCTTTGGCACTAAACTTGCTTGTGAGTAA 1146 0.5113 MSLRKVFRSRKFSRSFKEVLPAEGAAIVGGEDGVAGAGEESSNGNNGWSNMLPEILGEIVRRVDAAEEQWPNRQNVVACACVCKRWRDITREVVRVPSHTGKITFPACLKQPGPRDVPHQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRCGTHTEYIISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHSGAKPSSGRASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKCPVTPVVSPSVESSDSTPVNGHKIPDKEQVASGYTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2903 381 Pfam F-box domain 48 94 IPR001810 GO:0005515
Gso11g2903 381 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 1 381 - -
Gso11g2903 381 ProSitePatterns Tub family signature 2. 366 381 IPR018066 -
Gso11g2903 381 PRINTS Tubby superfamily signature 163 179 IPR000007 -
Gso11g2903 381 PRINTS Tubby superfamily signature 179 203 IPR000007 -
Gso11g2903 381 PRINTS Tubby superfamily signature 228 255 IPR000007 -
Gso11g2903 381 PRINTS Tubby superfamily signature 291 308 IPR000007 -
Gso11g2903 381 PRINTS Tubby superfamily signature 309 325 IPR000007 -
Gso11g2903 381 PRINTS Tubby superfamily signature 338 357 IPR000007 -
Gso11g2903 381 PRINTS Tubby superfamily signature 359 381 IPR000007 -
Gso11g2903 381 SUPERFAMILY F-box domain 46 91 IPR036047 GO:0005515
Gso11g2903 381 Gene3D Tubby Protein; Chain A 104 381 IPR025659 -
Gso11g2903 381 SUPERFAMILY Tubby C-terminal domain-like 97 381 IPR025659 -
Gso11g2903 381 Pfam Tub family 109 376 IPR000007 -
Gso11g2903 381 PANTHER TUBBY-RELATED 1 381 - -
Gso11g2903 381 ProSitePatterns Tub family signature 1. 309 322 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2903 Gso-Chr11 44782631 44786937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2903 1 381 TUB Transcription Factor Family AT1G53320 72.051 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gso11g2903 Tub 4.9e-102 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2903 K19600 - gmx:100801919 721.85