Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2901 ATGAAGAGGAACAGTTTGATCATGAAAGACTACACTCATCATCACAGTTGTGTCAACAACAAGAACCCAACAACAACAAAAGAATTTTCCCATGTTGTTGCCAACTGCTACAACAACAACAACATTCACAGCAATAATAATATTGCAGATCAGAATGACTATGTGAATGGCTTCCCATGGCCACCAAGATCATACACTTGTAGCTTCTGCAGAAAGGAGTTCAGGTCTGCTCAGGCACTTGGTGGACACATGAATGTTCATAGGAGGGATAGAGCAAGGTTGAGGCAGTCATCACCCCCAACTCATCATGAAGTTCATCAAGGTCAAGCTCAAGGCCCTATGCTCAACCTTAATCTTAACCCTAACAGCAACTCATCTTTGTCATTGTTACCACCACCACCATCATCTTCAGCAACAACTACTACTACTCTTAAGCCTGTTTTCACTTGCACATTGCCCTTGTTTGTTTCTCCCACTCCTCCTTCACCTTCTTCCGAGTTGAAGAGATGGGTTGTTGTGGATGGTATTGCATTGAACCCTTTGAGCAAAAAGACCAGTACCCCAGAGCACTACTCCAAGTCAAAGATTCCAGAATCTTTATCATCAGCTGGAGTTGGAGAATATCATCATGATCAAGCTTTTGCAAGGGAAGATGGGTGCAAAGTGTTGAAGAAAGGTGGTGACATTCTCAGGATGGACTTGGAGATAGGTTTGCCTAGAGGTTATGATTTGGATCTGGAGCTTCGTTTGGGTACTACCTACTCTTAG 768 0.4323 MKRNSLIMKDYTHHHSCVNNKNPTTTKEFSHVVANCYNNNNIHSNNNIADQNDYVNGFPWPPRSYTCSFCRKEFRSAQALGGHMNVHRRDRARLRQSSPPTHHEVHQGQAQGPMLNLNLNPNSNSSLSLLPPPPSSSATTTTTLKPVFTCTLPLFVSPTPPSPSSELKRWVVVDGIALNPLSKKTSTPEHYSKSKIPESLSSAGVGEYHHDQAFAREDGCKVLKKGGDILRMDLEIGLPRGYDLDLELRLGTTYS* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2901 255 Pfam C2H2-type zinc finger 65 89 - -
Gso11g2901 255 SUPERFAMILY beta-beta-alpha zinc fingers 62 92 IPR036236 -
Gso11g2901 255 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Gso11g2901 255 Gene3D Classic Zinc Finger 61 117 - -
Gso11g2901 255 MobiDBLite consensus disorder prediction 101 141 - -
Gso11g2901 255 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 92 IPR013087 -
Gso11g2901 255 PANTHER OS07G0101800 PROTEIN 8 255 - -
Gso11g2901 255 MobiDBLite consensus disorder prediction 96 141 - -
Gso11g2901 255 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 8 255 - -
Gso11g2901 255 SMART c2h2final6 65 87 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2901 Gso-Chr11 44769510 44770985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2901 46 251 C2H2 Transcription Factor Family AT3G23130 41.827 1.37e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso11g2901 zf-C2H2_6 1.2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2901 - - gmx:100793786 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1949 12 43446448 43447987 Gso11g2901 11 44769510 44770985 GST