Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2891 ATGAAGCCTTTTTCTCTCAACATGTTACAAGTATTTTGGTTTCTTGTCATTCCTTTAAACTCACCATGGTTGTGCCAAAACACAGTTGTGTATGCAAATGCAATGCTAGGAAATGAGACAGATCATTTGGCATTGCTCAAATTCAAGGAATCAATATCTAGTGACCCTTATGGAATCATGAAATCTTGGAATAGTTCCATCCACTTCTGCAAGTGGCATGGAATCTCATGCTACCCCATGCATCAAAGAGTTGTGGAGTTGAACTTACATGGGTACCAGTTGTATGGACCCATACTTCCTCAACTTGGAAACCTCTCTTTTCTAAGAATCTTAAAACTTGAAAACAACAGTTTCAATGGAAAAATCCCACGGGAGTTGGGTCATTTGTCACGACTAGAGGTACTCTATCTCACTAACAACTCATTGGTTGGAGAAATTCCTTCAAACTTGACAAGTTGCTCTGAGCTCAAAGACCTTGACTTGTCAGGGAACAATCTCATTGGTAAAATACCAATTGAAATTGGCTCTCTTCAGAAGCTTCAATACTTTTATGTTGCAAAAAACAACTTAACAGGAGAAGTCCCACCATCCATAGGGAATCTTTCATCCCTGATTGAGCTCTCGGTCGGTTTGAACAACTTAGAGGGAAAGATTCCACAAGAAGTTTGTAGCCTCAAAAACTTGTCACTGATGTCAGTGCCTGTCAACAAATTGTCTGGTACACTTCCTACTTGTCTTTACAATTTATCATCTCTTACTTTATTCTCAGTTCCAGGCAATCAATTTAGTGGTTCTCTTTCACCCAACATGTTTCACACACTTCCTAATCTCCAAGGAATTAGCATTGGTGGGAATCTATTTTCTGGTCCAATCCCCATTTCCATCACAAATGCAACTGTCCCTCAAGTTCTTAGTTTTTCTGGGAACTCTTTCACAGGACAAGTTCCAAATCTAGGGAAGCTAAAGGATCTTAGGTGGCTAGGTTTGTCTGAAAACAATCTAGGTGAGGGAAATTCAACTAAGGATCTGGAGTTTTTAAGATCACTGACAAACTGTAGTAAGTTGCAAATGTTATCTATATCCTACAATTATTTTGGAGGTAGTTTGCCGAATTCAGTGGGCAATTTATCCATCCAACTTAGCCAACTATATCTTGGGAGTAATCTGATATCAGGAAAAATTCCTATAGAATTAGGAAATTTAATTAGCTTAGCGCTCTTGAACATGGCATATAACTACTTTGAAGGGACTATTCCAACTGTTTTTGGCAAGTTCCAGAAGATGCAAGCATTAATTTTGAGTGGAAATAAACTGGTAGGAGATATACCAGCCTCCATAGGCAACCTCACTCAATTGTTTCATTTGCGTTTAGCACAAAATATGCTGGGAGGAAGTATTCCCAGGACCATAGGAAATTGCCAAAAGTTACAACTTCTAACCCTTGGGAAAAATAACCTTGCAGGAACCATACCCTCAGAGGTTTTTAGCCTTTCCTCACTAACAAATTTGCTGGACTTATCACAGAACTCCTTGAGTGGTAGTTTACCAAATGTAGTGAGCAAGTTAAAAAATCTTGAGAAGATGGATGTCTCTGAAAATCATCTGTCTGGTGATATTCCTGGAAGCATTGGAGATTGCACAAGCTTGGAGTACCTTTATTTGCAAGGGAATTCTTTCCATGGAATCATACCCACCACTATGGCTTCACTGAAAGGTCTTAGACGTTTAGACATGTCACGAAACCACTTATCTGGATCAATTCCTAAAGGTCTGCAAAATATTTCTTTCTTGGCATACTTCAATGCATCATTTAACATGTTGGATGGAGAGGTACCAACTGAAGGTGTCTTCCAAAATGCAAGTGAGTTAGCAGTGGCTGGAAACAATAAACTTTGTGGAGGTATTCCACAGTTGCATCTACCATCATGTCCTATCAATGCTGAAGAGCCTACAAAACATCATAATTTCAGGCTGATAGGAGTGATAGTTGGTGTGTTAGCTTTTCTACTCATACTGCTATTTATACTCACTTTTTATTGCATGAGGAAAAGAAACAAGAAACCAACTCTTGATTCACCAGTAACTGACCAGCTGCCTAAGGTTTCATACCAAAACCTACACAATGGAACTGATGGGTTTGCAGGTAGAAACTTAATAGGATCTGGAAATTTTGGCTCTGTGTACAAAGGAACTCTTGAGTCAGAAGATGAAGTTGTTGCCATAAAAGTCCTGAACCTTCAAAAGAAAGGGGCTCACAAGAGTTTCATTGCTGAATGCATTGCACTAAAGAATATTAGACATCGAAATCTGGTTAAGATTTTGACATGCTGTTCCAGTACAGATTACAAAGGTCAAGAATTTAAAGCTCTAATCTTTGAGTACATGAAAAATGGAAGCTTAGAAAGTTGGTTGCATTCATCAATAGATATTGAATATCAAGGTAGATCCTTAGACCTTGAGCAAAGGTTTAATATCATTACTGATGTTGCTTCAGCAGTGCATTATCTTCACTACGAGTGTGAGCAAACTATCCTTCATTGTGATTTAAAGCCTAGCAATGTTCTTCTTGATGATTGCATGGTAGCTCATGTAAGTGATTTTGGCTTAGCAAGATTGCTCTCAAGTATTGGAATATCTCTTTTGCAAAGTAGCACAATTGGAATAAAGGGGACTATTGGTTATGCTCCTCCAGAGTATGGAATGGGTTCAGAGGTGTCAATTGAAGGCGACATGTATAGCTTTGGGATTCTGGTTTTAGAAATATTAACTGGAAGGAGACCCACAGATGAAATATTTAAAGATGGCCATAATCTCCATAATCATGTTAAATTTTCAATTTCAAATAACCTATTGCAGATTGTGGACCCGACTATTCTCCCCAGTGAACTCGAAAGGACTGCTGGCAGTGAAAAGCTTGGCCCTGTGCATCCAAATGCAGAGAAATGTTTACTTTCACTTTTTAGGATTGCACTTGCTTGCTCAGTGGAATCACCAAAGGAAAGAATGAGTATGGTTGATGTCCTTAGGGAGCTTAATCTGATCAAAAGCTTTTCTCCTTTTGAGGTTCGAGGGAGGCTAAGCTAA 3084 0.3881 MKPFSLNMLQVFWFLVIPLNSPWLCQNTVVYANAMLGNETDHLALLKFKESISSDPYGIMKSWNSSIHFCKWHGISCYPMHQRVVELNLHGYQLYGPILPQLGNLSFLRILKLENNSFNGKIPRELGHLSRLEVLYLTNNSLVGEIPSNLTSCSELKDLDLSGNNLIGKIPIEIGSLQKLQYFYVAKNNLTGEVPPSIGNLSSLIELSVGLNNLEGKIPQEVCSLKNLSLMSVPVNKLSGTLPTCLYNLSSLTLFSVPGNQFSGSLSPNMFHTLPNLQGISIGGNLFSGPIPISITNATVPQVLSFSGNSFTGQVPNLGKLKDLRWLGLSENNLGEGNSTKDLEFLRSLTNCSKLQMLSISYNYFGGSLPNSVGNLSIQLSQLYLGSNLISGKIPIELGNLISLALLNMAYNYFEGTIPTVFGKFQKMQALILSGNKLVGDIPASIGNLTQLFHLRLAQNMLGGSIPRTIGNCQKLQLLTLGKNNLAGTIPSEVFSLSSLTNLLDLSQNSLSGSLPNVVSKLKNLEKMDVSENHLSGDIPGSIGDCTSLEYLYLQGNSFHGIIPTTMASLKGLRRLDMSRNHLSGSIPKGLQNISFLAYFNASFNMLDGEVPTEGVFQNASELAVAGNNKLCGGIPQLHLPSCPINAEEPTKHHNFRLIGVIVGVLAFLLILLFILTFYCMRKRNKKPTLDSPVTDQLPKVSYQNLHNGTDGFAGRNLIGSGNFGSVYKGTLESEDEVVAIKVLNLQKKGAHKSFIAECIALKNIRHRNLVKILTCCSSTDYKGQEFKALIFEYMKNGSLESWLHSSIDIEYQGRSLDLEQRFNIITDVASAVHYLHYECEQTILHCDLKPSNVLLDDCMVAHVSDFGLARLLSSIGISLLQSSTIGIKGTIGYAPPEYGMGSEVSIEGDMYSFGILVLEILTGRRPTDEIFKDGHNLHNHVKFSISNNLLQIVDPTILPSELERTAGSEKLGPVHPNAEKCLLSLFRIALACSVESPKERMSMVDVLRELNLIKSFSPFEVRGRLS* 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2891 1027 CDD STKc_IRAK 719 1014 - -
Gso11g2891 1027 SUPERFAMILY Protein kinase-like (PK-like) 687 1012 IPR011009 -
Gso11g2891 1027 ProSitePatterns Protein kinases ATP-binding region signature. 719 742 IPR017441 GO:0005524
Gso11g2891 1027 ProSitePatterns Serine/Threonine protein kinases active-site signature. 844 856 IPR008271 GO:0004672|GO:0006468
Gso11g2891 1027 PANTHER OS04G0122200 PROTEIN 26 1021 - -
Gso11g2891 1027 Pfam Protein kinase domain 717 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2891 1027 Pfam Leucine rich repeat N-terminal domain 39 77 IPR013210 -
Gso11g2891 1027 Gene3D Phosphorylase Kinase; domain 1 693 794 - -
Gso11g2891 1027 Gene3D Transferase(Phosphotransferase) domain 1 795 1020 - -
Gso11g2891 1027 SMART LRR_typ_2 449 473 IPR003591 -
Gso11g2891 1027 SMART LRR_typ_2 497 521 IPR003591 -
Gso11g2891 1027 SMART LRR_typ_2 129 153 IPR003591 -
Gso11g2891 1027 SMART LRR_typ_2 522 546 IPR003591 -
Gso11g2891 1027 SMART LRR_typ_2 570 593 IPR003591 -
Gso11g2891 1027 SMART LRR_typ_2 201 225 IPR003591 -
Gso11g2891 1027 Gene3D Ribonuclease Inhibitor 37 317 IPR032675 -
Gso11g2891 1027 Pfam Leucine rich repeat 130 190 IPR001611 GO:0005515
Gso11g2891 1027 Pfam Leucine rich repeat 548 607 IPR001611 GO:0005515
Gso11g2891 1027 SUPERFAMILY L domain-like 39 334 - -
Gso11g2891 1027 SMART serkin_6 713 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2891 1027 ProSiteProfiles Protein kinase domain profile. 713 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2891 1027 Gene3D Ribonuclease Inhibitor 337 644 IPR032675 -
Gso11g2891 1027 PANTHER LRR RECEPTOR-LIKE KINASE 26 1021 - -
Gso11g2891 1027 SUPERFAMILY L domain-like 380 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2891 Gso-Chr11 44667166 44670678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2891 38 1015 Receptor kinase-like Gene Family AT3G47570 45.960 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gso11g2891 Pkinase 1.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2891 - - gmx:100792724 1992.62