Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2888 ATGGAGAATCAGCCTTCAAATGGAAGAAGGGCAATGGAAGAAGAGCTGATCAAAGGGTGTGAGACAGCAAACCAGTTACTTGAAGTACTTGTTCATAAATCCAACACTACTCATGAAGATGTAGAACTAGAAGGGTCAGTGCAACCTTTGGTTGAAGATCTTGTGCGCAAGGTGTTGTGTTCATTCACAAATACCCTTTTGCTATTGAACACTAATAATATTAATGATGTCTCCAAATACACAATCAAAGATGCCCCTTCGTCCGTGAAATGTCCAGAGACTCAGGGTACGGATGAGGCTTGCAAGAGTTTCTTCCACGCTGAAAAACGAAGAGGGTGCTACAAGAGAAAATCAAGTGCACCAACATGGGAGACGAACAGCTCAATTCTGCTGGAAGACGGCTATGCATGGAGAAAATATGGACAAAAAATAACACTGAATGCAAAATACCTCAGGAGCTACTACAGATGCACTCACAAGTATGATCAGGGTTGTCCAGCAACCAAACAGGTTCAGAGAACTCAAGAGGACCCTCCATTGTACCGGACAACATATTATGGACATCACAATTGCAAAAGCTCTTTAAGTCCTGAGATAATGATCGAACCAGCTTTTTCTTCTGGCTCTTCTATGATCCTTAGCTTCACTAGCACCCTCACAAGCAAAGAAGGATACCCATTTTCATCATCACTTTCTTCATCCACAAAACTGGAGCCTATGGAAGTGATTCAGGATGACCATATCGTTCAGAACCAATTATCCTCATCAGATTACCTCCTGTTATCTGACTATGGACTTGATTTCAATTATTAG 813 0.417 MENQPSNGRRAMEEELIKGCETANQLLEVLVHKSNTTHEDVELEGSVQPLVEDLVRKVLCSFTNTLLLLNTNNINDVSKYTIKDAPSSVKCPETQGTDEACKSFFHAEKRRGCYKRKSSAPTWETNSSILLEDGYAWRKYGQKITLNAKYLRSYYRCTHKYDQGCPATKQVQRTQEDPPLYRTTYYGHHNCKSSLSPEIMIEPAFSSGSSMILSFTSTLTSKEGYPFSSSLSSSTKLEPMEVIQDDHIVQNQLSSSDYLLLSDYGLDFNY* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2888 270 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 270 IPR044810 GO:0003700
Gso11g2888 270 Gene3D WRKY domain 102 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso11g2888 270 SMART WRKY_cls 131 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso11g2888 270 Pfam WRKY DNA -binding domain 132 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso11g2888 270 ProSiteProfiles WRKY domain profile. 126 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso11g2888 270 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 270 - -
Gso11g2888 270 SUPERFAMILY WRKY DNA-binding domain 128 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2888 Gso-Chr11 44637058 44646229 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2888 51 194 WRKY Transcription Factor Family AT3G56400 42.568 3.53e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso11g2888 WRKY 2.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2888 - - gmx:102659367 536.184